RNA id: TU144794


Basic Information

Item Value
RNA id TU144794
length 426
lncRNA type inter_gene
GC content 0.45
exon number 1
gene id G125347
representative True

Chromosome Information

Item Value
chromosome id NC_048566.1
NCBI id CM023220.2
chromosome length 103806877
location 24855642 ~ 24856067 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

aggtattctgccgctgtgtactctctgtttagggccaaatagcattctagtttgctctgtttttttgttaattctttccaatgtgtcaagtaattatctttttgttttctcatgatttggttgggtctaattgtgctgttgtcctggggctctgtagggtgtgtttgtgtttgagaacagagccccaggaccagcttgcttaggggactcttctccaggttcatctctctgtaggtgatggctttgttatggaaggtttgtgaatcacttccttttaggtggttgtagaatttaacggctcttttctggattttgataattagtggttatcggcctaattctgctctgcatgcattatttggtgttctacgttgtacacggaggatatttttgcagaattctgcgtgcagagtctcaatttggtgt

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU144772 lncRNA downstream 21102 24813644 ~ 24834540 (-) True G125325
TU144714 lncRNA downstream 147933 24707474 ~ 24707709 (-) True G125273
TU144670 lncRNA downstream 170359 24633766 ~ 24685283 (-) True G125230
TU144684 lncRNA downstream 205498 24648563 ~ 24650144 (-) True G125244
TU144658 lncRNA downstream 233009 24622403 ~ 24622633 (-) True G125220
TU144799 lncRNA upstream 18802 24874869 ~ 24879348 (-) True G125352
TU144838 lncRNA upstream 98838 24954905 ~ 24956029 (-) True G125388
TU145070 lncRNA upstream 433651 25289718 ~ 25291323 (-) True G125598
TU145115 lncRNA upstream 498890 25354957 ~ 25355276 (-) True G125643
TU145116 lncRNA upstream 500299 25356366 ~ 25356581 (-) True G125644
XM_036943349.1 mRNA downstream 254257 24584393 ~ 24601385 (-) True LOC110538978
XM_036943353.1 mRNA downstream 260257 24584393 ~ 24595385 (-) False LOC110538978
XM_021625867.2 mRNA downstream 314744 24531424 ~ 24540898 (-) False LOC110538887
XR_005035978.1 mRNA downstream 314744 24531424 ~ 24540898 (-) False LOC110538887
NM_001160485.1 mRNA downstream 351049 24503806 ~ 24504593 (-) True LOC100301652
XM_036943381.1 mRNA upstream 6839 24862906 ~ 25110554 (-) False LOC110538828
XM_036943390.1 mRNA upstream 15664 24871731 ~ 25110583 (-) True LOC110538828
LOC110533704 mRNA upstream 561373 25417440 ~ 25427699 (-) False LOC110533704
XM_036943476.1 mRNA upstream 572916 25428983 ~ 25441162 (-) False LOC110539072
XR_005035994.1 mRNA upstream 572916 25428983 ~ 25441162 (-) False LOC110539072
TU144748 other downstream 79015 24775220 ~ 24776627 (-) True G125305
TU144590 other downstream 321113 24531662 ~ 24534529 (-) True LOC110538887
TU144456 other downstream 530806 24324580 ~ 24324836 (-) True G125043
TU144410 other downstream 585506 24269226 ~ 24270136 (-) True G125003
TU144265 other downstream 694199 24159167 ~ 24161443 (-) True LOC110538705
TU146650 other upstream 1705547 26561614 ~ 26562127 (-) True G127083
TU146643 other upstream 1795309 26651376 ~ 26663014 (-) True LOC110539285
TU147564 other upstream 2415193 27271260 ~ 27278124 (-) True LOC110485245
TU149009 other upstream 2910090 27766157 ~ 27766532 (-) True G129250
TU149117 other upstream 3240615 28096682 ~ 28149986 (-) True LOC110485663

Expression Profile