RNA id: XR_005035960.1


Basic Information

Item Value
RNA id XR_005035960.1
length 608
RNA type mRNA
GC content 0.44
exon number 3
gene id LOC118938710
representative True

Chromosome Information

Item Value
chromosome id NC_048566.1
NCBI id CM023220.2
chromosome length 103806877
location 24138846 ~ 24139668 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

TATATTTTCTGGAATAACACTCTCTTTCCTACAGGGCTAAAGCCACTATGCACTGTCAATATATTCTACAGTTATCTCTGTTAACTCTACTCTCCCTGCCAGGCACACTGGCACAGACCTGGTCTGTCTGGTACCGTGACAGGGACAGGATTACTGTTATCTGTGCATCAAAAGGCTCATCAGTGGTATTTGACTGTATATACAGCTACCCAGCTACCCAGATAGTTAGAAGAAAGATATGGTTCACTCCGAGAGGCGATACAAAACAAGATGGCTCACAGCAAGGAGATGGAGTGTTTAACACATCTGGACTGACTAATAAATCAAGATACAGTGGAAGAACAGAGTTTTATGACCAAGACAATAACTGCACACTGAAACTCAACAATGTGACTGAAGATGACAGTGGCAGATTCTTCTTCAGATTTGAGGCAAATACAAGTAATCAGCCCCCTCAGGGATTTACAGGATCGTGGGGTGTGGACCTGACAATACCAGTCTTATCCCTAAAGTTAAATGAAAATGGCCCCGTTAAGGAGCGAGACCACGTCACCTTGGCCTGCACCTCCACCTGTAACCCTCCTTAAATGGAGTTCCTCTGGTTTAAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU144352 lncRNA downstream 9159 24129417 ~ 24129687 (-) True G124947
TU144263 lncRNA downstream 12607 24124948 ~ 24126239 (-) True LOC110538681
TU144338 lncRNA downstream 18778 24119691 ~ 24120068 (-) True G124935
TU144339 lncRNA downstream 24352 24113674 ~ 24114494 (-) True G124936
TU144335 lncRNA downstream 27265 24110699 ~ 24111581 (-) True G124932
TU144365 lncRNA upstream 33558 24173226 ~ 24173439 (-) True G124958
TU144349 lncRNA upstream 37182 24176850 ~ 24177135 (-) True G124944
TU144348 lncRNA upstream 97983 24237651 ~ 24238511 (-) True G124943
TU144401 lncRNA upstream 114988 24254656 ~ 24254894 (-) True G124994
TU144402 lncRNA upstream 116072 24255740 ~ 24256041 (-) True G124995
XM_021625658.2 mRNA downstream 7243 24124954 ~ 24131603 (-) False LOC110538681
XM_021625667.2 mRNA downstream 7243 24124954 ~ 24131603 (-) False LOC110538681
XM_021625650.2 mRNA downstream 7481 24124954 ~ 24131365 (-) False LOC110538681
XR_005035947.1 mRNA downstream 47382 24084443 ~ 24091464 (-) True LOC110533695
XR_002475018.2 mRNA downstream 48228 24084443 ~ 24090618 (-) False LOC110533695
XM_036962226.1 mRNA upstream 4851 24144519 ~ 24172836 (-) False LOC110538705
XM_021625679.2 mRNA upstream 38855 24178523 ~ 24184172 (-) False LOC110538717
XM_036943182.1 mRNA upstream 38855 24178523 ~ 24184172 (-) True LOC110538717
XM_021625736.2 mRNA upstream 110194 24249862 ~ 24253101 (-) True LOC110538767
XM_036943239.1 mRNA upstream 340597 24480265 ~ 24492482 (-) False LOC110538859
TU144219 other downstream 234169 23903839 ~ 23904677 (-) True G124840
TU142857 other downstream 857048 23280179 ~ 23281798 (-) True LOC110538355
TU142589 other downstream 939594 23185640 ~ 23199252 (-) True G123435
TU142449 other downstream 1133034 23004986 ~ 23005812 (-) True G123308
TU142062 other downstream 1760686 22376153 ~ 22378160 (-) True G122972
TU144265 other upstream 19499 24159167 ~ 24161443 (-) True LOC110538705
TU144410 other upstream 129558 24269226 ~ 24270136 (-) True G125003
TU144456 other upstream 184912 24324580 ~ 24324836 (-) True G125043
TU144590 other upstream 391994 24531662 ~ 24534529 (-) True LOC110538887
TU144748 other upstream 635552 24775220 ~ 24776627 (-) True G125305

Expression Profile