RNA id: XM_021564046.2


Basic Information

Item Value
RNA id XM_021564046.2
length 1535
RNA type mRNA
GC content 0.52
exon number 8
gene id ldha
representative True

Chromosome Information

Item Value
chromosome id NC_048566.1
NCBI id CM023220.2
chromosome length 103806877
location 45469242 ~ 45491918 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

CTCTGCATGGACATGACATTTAACACGAGACACCCGGGACCCTCCCAGTGTGTCATGTAATCACGCAGCGTTTACCGTGCACCGCTCTGCTGCTTAAATACCGGGaacctccctcacacacaccagTGCCATAGAAAAGCTGCATCCAGCCAGGGAAGAGGCCAGCCAAAGACATTCCAACTCGCATTTCAGTGTTGTTTCCACGTCACTTTCACGAAACCTTACAAGATGACCACTAAGGAGAAGCTGATCACCCATGTGTTGGCTGGTGAGCCCGTTGGCTCCCGAAGCAAGGTGACAGTGGTTGGCGTCGGCATGGTTGGCATGGCCTCCGCAGTCAGCGTCCTGCTCAAGGACCTGTGCGATGAGCTGTGCCTGATTGATGTGATGGAGGAAAAGCTGAAGGGTGAGGTCATGGACCTGCAGCATGGCAGCCTCTTCTGCAAGACCCACAAGATCGTGGGCGATAAGGACTACAGTACAACCGCCCATTCCAAGGTGGTGGTGGTCACCGCCGGTGCTCGTCAGCAGGAGGGCGAGAGTCGTCTGAACCTGGTGCAGCGTAACGTCAACATCTTCAAGTTCATCATCCCCCAGATCGTCAAGTACAGCCCCAACGCTATCCTGCTGGTCGTCTCCAACCCCGTTGACATCCTGACCTACGTGGCCTGGAAGCTGAGCGGTTTCCCCCGTCACCGCGTCATCGGTTCCGGCACCAACCTGGACTCCGGTCGTTTCCGCCACCTTATGGGCGAGAAGCTGCACCTTCACCCCTCCAGTTGCCACGGCTGGATCATTGGAGAGCACGGAGACTCCAGTGTGCCCGTATGGAGTGGCGTGAATGTTGCTGGTGTTTCCCTGAAAGGCCTAAACCCACACATGGGCACAGACGCAGACAAGGAGGACTGGAAGCATCTCCACAAGATGGTGGTCGATGGTGCCTATGAGGTCATCAAGCTGAAGGGTTACACCTCCTGGGCTATCGGCATGTCTGTCGCTGACCTGGTTGAGAGCATCCTGAAGAACCTTCACAAAGTTCACCCTGTGTCCACCCTGGTCCAGgGGATGCACGGTGTGAAAGATGAGGTGTTCCTCAGTGTGCCATGCGTGCTGGGCAACAGTGGTCTGACCGACGTCATCCACATGACCCTGAAGCCCGAGGAAGAGAAGCAACTAATCAACAGCGCCGAGACCCTGTGGGGCGTACAGAAAGAGCTCACATTGTAAAGCGGAGGGTTAATTTTATCAGCAATGAGACAATACTCAATCACCTATTTTTCCCAGACTAAAACCAATGATAATGAGATGTCCTGAAACTATGACAAATGCAAATTACTTTTCATTTTAGTCTACGAAAATGTGACAAGACTTCCACGTGAGGCTATAATGGACATTCATGGTCGACTGATAAGTTACTTATCAGGACgaaattacaacaaaaaaaactttGTAAAGAGCCCCCTGTGCCATCTGGATATACTTACGATACGATTTACTCCAACCAAATAAAACTACCAGGATAATGAAACAACCAA

Function

GO:

id name namespace
GO:0006096 glycolytic process biological_process
GO:0044262 cellular carbohydrate metabolic process biological_process
GO:0055114 oxidation-reduction process biological_process
GO:0001666 response to hypoxia biological_process
GO:0005737 cytoplasm cellular_component
GO:0004459 L-lactate dehydrogenase activity molecular_function

KEGG:

id description
K00016 LDH, ldh; L-lactate dehydrogenase

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU170163 lncRNA downstream 448 45466156 ~ 45468794 (-) True G148366
TU170044 lncRNA downstream 25489 45422620 ~ 45443753 (-) True G148275
TU170083 lncRNA downstream 185001 45284030 ~ 45284241 (-) True G148287
TU170078 lncRNA downstream 195540 45273436 ~ 45273702 (-) True G148282
TU169858 lncRNA downstream 211842 45257129 ~ 45257400 (-) True G148104
TU170199 lncRNA upstream 22684 45514602 ~ 45520010 (-) False G148399
TU170200 lncRNA upstream 22684 45514602 ~ 45518511 (-) True G148399
TU171293 lncRNA upstream 223849 45715767 ~ 45715997 (-) True G149430
TU171320 lncRNA upstream 258997 45750915 ~ 45816986 (-) True G149455
TU171338 lncRNA upstream 285316 45777234 ~ 45837990 (-) True G149472
XR_005036947.1 mRNA downstream 74274 45278394 ~ 45394968 (-) False si:ch211-272n13.3
XR_005036948.1 mRNA downstream 74274 45278394 ~ 45394968 (-) False si:ch211-272n13.3
XR_005036949.1 mRNA downstream 74274 45278394 ~ 45394968 (-) False si:ch211-272n13.3
XR_005036950.1 mRNA downstream 74274 45278394 ~ 45394968 (-) False si:ch211-272n13.3
XR_005036952.1 mRNA downstream 74274 45278394 ~ 45394968 (-) False si:ch211-272n13.3
XM_021564060.2 mRNA upstream 647338 46139256 ~ 46289343 (-) True abtb2b
XM_036949745.1 mRNA upstream 826639 46318557 ~ 46491353 (-) False b4galnt4a
XM_021564073.2 mRNA upstream 826639 46318557 ~ 46756003 (-) True b4galnt4a
XR_005036958.1 mRNA upstream 1097968 46589886 ~ 46592723 (-) True LOC118940396
XM_021564083.2 mRNA upstream 1380377 46872295 ~ 46921608 (-) False tmem86a
TU169728 other downstream 301143 45134568 ~ 45168099 (-) True LOC110490531
TU169520 other downstream 605683 44863085 ~ 44863559 (-) True G147800
TU168984 other downstream 890487 44571948 ~ 44578755 (-) False LOC110490449
TU172175 other upstream 1352262 46844180 ~ 46921593 (-) False tmem86a
TU172204 other upstream 1354234 46846152 ~ 46849616 (-) True G150290
TU172551 other upstream 1472816 46964734 ~ 46993665 (-) True G150618
TU172611 other upstream 1702975 47194893 ~ 47205433 (-) False G150675
TU173467 other upstream 2358867 47850785 ~ 47851348 (-) True G151474

Expression Profile