RNA id: XM_036957952.1


Basic Information

Item Value
RNA id XM_036957952.1
length 4093
RNA type mRNA
GC content 0.53
exon number 22
gene id LOC110498617
representative True

Chromosome Information

Item Value
chromosome id NC_048566.1
NCBI id CM023220.2
chromosome length 103806877
location 86658014 ~ 86676250 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

CCTCTCGACGGTTGCGTAGTAACTGAGCGGGTTTCCTGTTTTTCGCTTCGACGCGGGTGAAGGGTGGTTAAGGTTTGGGCTCGAGCGAATCCATTGAGAGTAGGTGCCAGGTGTGTCCTGCTGAGGAGGACCCAGTGGAGGCAGCAGAGAGTACCCCTCAGACAGAGCCCAGAGAGGCTGCATCACCCGACATTGAACCAGAACCCCAGGAGGAGCCAGAGCCCCAGAGGGCCTCTCCATCCCCTCGTTCAAGCCCAGAGCCAGAGCGATTCAAGACAGTAGAGCCTGAACCTAAACCAAAGGCCCAGGATGCCAAAGTAGCACCTGAACCGGTGACCCAACAACCACAGGAGGAGTGGAAGACTGTAGAGGAGGGCGACTGTGGTATTAAGTATTTGCTCATTATAATACAACAGTTTTTATGTTTGAAAGGAGAATATTGTAATCACATTTTAATGCATATCTTCTATCTTGGTTTGTAACTTGGTTTGCAAGTCCCATGATGGACCTGGCCAATCTTTTCTCTTCGGAGAATGCAGTGACCACAACATGTGTGTGCCTGCATTTTGCTTGGGTGCGTGCATTCATGCTCTCGCACAGTGCTATCTGATGACAGACAATGTGACTGAAGAAGCTCACGTCAGAGTGTTCATTTGGATGAGTGTTGTCTTGTGCTGCCTGACTGACGGTGCTGTGCTCTCCTCCCCTGCCAGCTGCGATGCAGTAAAGAGCTGTCTCATGCGTATTCCTCACGCGCCTGCCTGCCTCAACAGCTTCAATAACCTGCTGAAAGAGTACAACATCACCACTCCTAAACTTCCCCCCATGCCCCAGCTCCCCACCAACCTCTCCCAGTTCACTTCCCAGGTCACCCAGCTAATGCCCTCTCTCCCCCCAGAACTCTCCCAAGAGTTCTTCCAGTACTCTCGGCCATTCACCCAAATGTCCCAGCGTGTCTCCCAACTGCCCCAACAGATGTCCCAACTGCCCCACCAGCTCCAAGTTTAAATACCTCAGCAGTTACCTGGTCTACCCACCAACCTACTCCAGCAGTTATCCAGCTTACCCCAAACCCTGGCCAATCTTCCCAGCCAGATACACAACTTACCTCAGCGAGTGGGATAGTCCTACACCAACGTGCAGAACCGCCTGAACAGCCTTAAGCCCCAGGATGCctaagcagcagcagcaaaaccGGGACCTGGAGTTGGACCGCCTGGTCCGCCAGGTCCCTCTCCAACACCACCCTCCGACTCACAGCCCCTCACCGTCCTCCCCCAACAGTACCCTAGAGCTGCCCAACGTGCCCTCCTACCCCCGCCTGCCACCCATTAGCCTGTCCAGGCACCTGTCAGGGCTTTTCAACCCCACCTTCCACATCGAGGACGACCCCACGTCCGCTCTACCCTCAGTGAGCTCCAGGCTCAGTGTGCACCCAGCTGTCAGTGTGGAGGATGTGGATTCCggcggagagggaggagggggcagaggggaGCACCACTGCCATCACATTCCCCAAATCCTTACCCTACAGGACCCCAACTTCAAGACCCTGACCGTACCCGGAGTGTCCAAAACCAGCCGTCAGAGTAAAGTTGCTGAAAAAGATGAGAAGAAACCCAAGAATATCTGGACCAATATAAAGAAGTTGTACTCTCAGAGtgaggatgaagaggagatggAGATCGCAGTGAGGGCATGGCCTAGCCAGTCCAGCATCCTCAGTGGAGACGATGGGCTAAAGGAGCGCCCTGCGTCTTCCGCTAGCCAGGCCAGCTACATGGTGAACGAGCGCCTACAGGAGCTGGTCAAGATGTTTAAGGAGAGGACAGAAAGGGCCAAAGAGAAACTCATAGATCCAGATCACTCTGATGATGACAGTCCAACTGCCTCCCCTGCGAGAGCTCCAACACCACCTCCTGCGCCTCCAGAGGAGCCgaaggaggaggagatagaggagcagCAACCCAAGCCTAGATTATGCTGCAAGGTGATGCCTCCTCGCTGGATCAGAGCTCTGCTGCACTACCGCTTCCCCGCTAGCATCGACCCCTTCACCAatctggtCTATGTGCTGTGGCTGTTTTTCGTCACCTTGGCGTGGAACTGGAACATGTGGCTTATCCCGGTGCGCTGGGCCTTCCCCTACCAGACCCCCAGTAACATCTACCTGTTTCTACTCACTGACTATCTGTGTGACCTCATCTACATCCTGGACATCCTGGTCTTCCAGCCCCGCCTGCAGTTTGTCCGCAGTGGAGACATAGTGTTTGACAAAAAGGACATGAGAGTGAATTACATGAAAACCTTCCGGTTCAAGATGGATGTCATCAGTCTTGTTCCACTGGAGTTGTTCTATTTTAAAACTGGGATCAACCCACTCCTCCGCTTCCCACGACTACTAAAGATAATGTCTTTCTTTGAGTTCAACGACCGTCTTGAGGGCATCCTTACCAAAGCCTACGTTTACAGAGTGATCCGGACCACCACCTACCTGCTGTACTGCCTGCACTGTAATGCCTGTCTGTACTACTGGGGCTCTGCGTATGAAGGTCTGGGCTCCACGCAGTGGGTCTATGACGGACAGGGCAACAGTTACATCCGCTGCTACTACTTTGCTGTGAAGACCCTGATCACCATTGGTGGACTGCCAGACCCCACAACGCTCTTTGAAATCATCTTTCAGCTCATAAACTACTTTGTTGGAGTGTTTGCCTTTTCCATCATGATTGGACAGATGAGAGATGTGGTTGGTGCAGCCACAGCAGGACAGACGTACTACAGAGCATGCATGGACAACACTGTCAAATACATGGCCTCCTACCGTATCCCTAAAGACGTGCAGAACCGGGTTAAAACCTGGTACAACTACACCTGGCAGTCCCAGGGCATGCTGGATGAACAGGAGCTTCTGGTTCAGCTCCCAGACAAGATGAGGCTGGACATCGCTGTGGATGTCAACTATGACATTGTCAGTAAAGTGTCTCTCTTCCAGGGTTGCGATAGACAGATGATCTTTGACATGCTGAAGAGACTGAGGTCTGTTGTTTACCTCCCAGGGGACTATGTCTGCAAAAAGGGTGAAGTTGGGCGGGAAATGTACATCATCAAAGCCGGAGAGGTGCAGGTGGTGGGCGGGCCAGATGGGAAGACTGTGTTTGTCACACTGAGGGCGGGATCAGTGTTTGGGGAAATCAGCTTGCTAGCAGTTGGTGGAGGGAACAGGAGAACAGCAAACGTGGTGGCTCATGGCTTCGCCAACCTGTTCATCCTGGACAAGAAGGACCTCAATGAGATTCTAGTGCATTACCCCGAGTCCCAGAAGCTGCTCCGCAAGAAGGCCAGGAAGATGCTCACGAAAGATAAGAAGCCTCAGAAGGAGCCGGCCCAGGTGATCCCTCCTCGAACAGTCACGCCCAAGCTATTCAAAGCTGCTCTGGATGTGGCGCATCAGAAAACAGGGCTCAAAGGGACCCTCTCCAAGATTAAGGAGAAGATCAACAAATCCAGCGTTTCTCTACAGCCCTCCATgtcctcctccctgcctcccttgtccccagtctctccagtctccagtctGGACCCAGAGCGCAAGGCTGACGCCACGTCACCAACCTTAGACAGCTCCACGCTGCTCTGCCCCGTCTCCCATTGTCACGGAGATGAGACACTCTCCAAGGAGCAGGGCCATGTGGAGGGAGAAGTTGCAGCAGAGAGTGGGAagaagaaagaaaagagaaaggCATGAGTTGTCTCCGAAAGCTGTCTTCATGTGGAGAAAGGGATGCACTTTTTTGTCCCTCTGTACTCTACTGCagagagggagaccagagagagaagagCCATGGTTCCTAAAGATCATCCAATTATGTCTCAAGAGTCACAGACTCAGTTTCTGTTCCTTTATACCCATAGACTcttattttagctaaccctttgaTACTCAGTACACTGAGTTTACCAAatttggaacaccttcctaatattgagttcaaCCGCCCCCTTTcaccctcagaacagactcaatttttcatggcatggactctacaaggtgtcgaaagcattccacagggatactggccactgttgactc

Function

GO: NA

KEGG:

id description
K04952 CNGB1; cyclic nucleotide gated channel beta 1

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU224140 lncRNA downstream 3474 86648809 ~ 86654540 (-) True G198007
TU224137 lncRNA downstream 10026 86647681 ~ 86647988 (-) True G198005
TU224104 lncRNA downstream 46750 86607931 ~ 86611264 (-) True G197974
TU223970 lncRNA downstream 86934 86570701 ~ 86571080 (-) True G197864
TU223940 lncRNA downstream 106263 86551438 ~ 86551751 (-) True G197844
TU224174 lncRNA upstream 31235 86707485 ~ 86708266 (-) False LOC110498636
TU224173 lncRNA upstream 31401 86707651 ~ 86708233 (-) True LOC110498636
TU224175 lncRNA upstream 43461 86719711 ~ 86720152 (-) True G198032
TU224177 lncRNA upstream 52253 86728503 ~ 86732160 (-) False G198034
TU224178 lncRNA upstream 52253 86728503 ~ 86732160 (-) False G198034
XM_021575232.2 mRNA downstream 131244 86520022 ~ 86526770 (-) True setd6
XM_021575228.2 mRNA downstream 131245 86520022 ~ 86526769 (-) False setd6
XM_036957791.1 mRNA downstream 237430 86141721 ~ 86420584 (-) True ccnd2a
XM_036934360.1 mRNA downstream 253859 86401369 ~ 86404155 (-) True LOC118936857
XM_036957794.1 mRNA downstream 465906 86141721 ~ 86192108 (-) False ccnd2a
XM_036934741.1 mRNA upstream 7837 86684087 ~ 86695202 (-) True LOC118937297
XR_005038618.1 mRNA upstream 23091 86699341 ~ 86701251 (-) True LOC118942936
XM_036934371.1 mRNA upstream 31226 86707476 ~ 86714996 (-) False LOC110498636
XM_036957981.1 mRNA upstream 38810 86715060 ~ 86719172 (-) False zpd
XM_036957982.1 mRNA upstream 38810 86715060 ~ 86719172 (-) True zpd
TU223618 other downstream 694349 85959845 ~ 85963665 (-) True G197554
TU223542 other downstream 814521 85836299 ~ 85843493 (-) False G197498
TU223547 other downstream 814521 85836299 ~ 85843493 (-) False G197498
TU223549 other downstream 814521 85836299 ~ 85843493 (-) True G197498
TU221798 other downstream 2018258 84609734 ~ 84639756 (-) True LOC110498022
TU224521 other upstream 226786 86903036 ~ 86903956 (-) True G198342
TU225173 other upstream 645889 87322139 ~ 87326469 (-) True G198912
TU228163 other upstream 2930587 89606837 ~ 89609890 (-) True LOC110499346
TU228979 other upstream 3701307 90377557 ~ 90441425 (-) True G202279
TU230773 other upstream 4912962 91589212 ~ 91591049 (-) True G203915

Expression Profile