RNA id: XR_002475057.2


Basic Information

Item Value
RNA id XR_002475057.2
length 1984
RNA type mRNA
GC content 0.47
exon number 4
gene id LOC110533876
representative True

Chromosome Information

Item Value
chromosome id NC_048566.1
NCBI id CM023220.2
chromosome length 103806877
location 86743932 ~ 86747314 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

GCTTATGTAAACATAGCCTGTGTAGTTTGTAGAACCATACAAAACATTACTTTTTTGTGTGTCTCGTCAAAAATTCAGAACTGTAATTGCATCCTAATATTTTCTACTCTGGAAACATCTGAACATACTGCTCCAGAGACTTATCTGCCCTAGTTTCCTCCACCAATCATTGAAGGATTATCTCAAATTGTTGCACCTGAATAACGAAACACCAGCATAGCATGTGTGCTGCAGCTCATTCATGATGGCTGTGTCTGTCTACCTTTTAAGGCTGCAGTTATGGCTATGCTGTGTGTACAGCGTCTCACTGTGGAGCCCCAGTACTACAGAGCTGCACATTATCCCAGCCAGCATGACCAGGTCCACAGTTCCTCAGCCTGGAGTAGCACTTTTCCTGCTGACCTCCGGTCAAAAAGTGCTCCAGTAGATTTCCGCTTAACTATACCCTTCCAACGCCTCTCAAGTCCACCGACAACCTCTACCAGTAGTCCTGGCTCTAATCAGAAAGGCGGCACCCCTTGTGCTGGTCCTGCTCAGGGGGGCCCAGACCCAAACCAAGATTAGTCTGCCCCCAATGGCTCTGACACCCAGAGAGAAGTTTCCCATAGCCCCATTGGAAAGATCCAAGGTGTAAAGTTGTTTTTTATCCCAGATAAGATGGAGCTAACGGATTTGACCAAACCTCAAACTGGAAAGACCAGCTGTGCCATTTACCCTATTCCCTTAGCCATTGGTCCCCCCCCCAGTATGAGACAAATCGCAGTGGCTATTACTCGCATACCACATCTTTCCCCATGTATTATTCAAACCCAACTTCTTCAGTTTACCCTGTTCCAATGTGGTATGGTCCCACTCAGGATGTTGAGGTTCCCAATGGTTATAACCCAGGTCAGGTAAAGCCTCCCACTAACTTTGGCAAAGGACCATTTCTCCCAAACCAATCACTGCAGCTGGTCCTGCACCAGTTGGCTCAAGTACCCCCTCAGCCTGGAAATGTTCCTAGTGGACATTACCAAGGTCTGAAGAACCCCACTACTACCCAATTTGGGACACCCTAGACTGGAGGAGGACAGGCTGATAAGAAATCCTCTCCTGTCCAGACAGGAAATAAACCTGATTCCTCCAGAATGGAAAGCTCTCAAAACCTGCACTCCAGCAATATAACCCCAGCTGTGACCCTCCTTATAGTGTAGGTCAGTATAAATATAAACCCCCAACTCCAATCAAACCTGACCCTGTGCCCACCAATGTTGGCTATGGCCAAAATGGAGGAGCTCTTAGTGGTTACTACTACCCGGGTCAGGAAAACCTCTCCCCAGGTTATTTTGGCAAAAGACTGACTGAACAAACTATGCCTCCAAAACCTACTGTTGACCCTGTACCCAATACCTCTGATCCTATCCACTATGGAAACTATTTTCTAGTTCAAACTAAACCTTCCATCTCAAATTCAGGAATAAGCCAGGCTGGTAAGAAACCTTCAGTCCAGAAAGGTAGTGAACTTGGTCCACCAAGCCCCCAAATAAGACCTGTCCCCCCCAGAATTATACCCAAGATATGGCTCTCCTTACAGTGTGGATAGCCACAAGTAGGAACTCTCAGCCACCTTTTCACAGCACTTGGACCACAAACCTGCTTTGGAAGTCAACATGTTTGCACCTTTTCACAGTGGATTAAACCCGAATGCAGCCAACCAGTTCGCCCAGATTACCAGTGATTCAAGCATGGAGGCTGAGAGTGGTGAAGAGCCTAGTCCTGTCCAACCCACTCCTGAATCAGATGAAGGTGCAGGTCCCAGAGGATTTATGCCACAAATACTTCCTCAGAGAAACTACGCCCATTCCTAGAGTGGAGGCTCCCGTGGTGATGTCGTTCCAGGAAGACCTGAATTCAGGATGACTTAAGTGCAGGCTCGGTGATCTCCTGACCATGGACTTCAATTCTCTACAGCACTTTGATTACTAATAAATAATTCAATATTTCA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU224177 lncRNA downstream 11772 86728503 ~ 86732160 (-) False G198034
TU224178 lncRNA downstream 11772 86728503 ~ 86732160 (-) False G198034
TU224179 lncRNA downstream 11772 86728503 ~ 86732160 (-) False G198034
TU224180 lncRNA downstream 11772 86728503 ~ 86732160 (-) True G198034
TU224175 lncRNA downstream 23780 86719711 ~ 86720152 (-) True G198032
TU224225 lncRNA upstream 13395 86760709 ~ 86760932 (-) True G198074
TU224379 lncRNA upstream 115594 86862908 ~ 86863261 (-) True G198224
TU224385 lncRNA upstream 123110 86870424 ~ 86870635 (-) True G198230
TU224386 lncRNA upstream 123932 86871246 ~ 86873200 (-) True G198231
TU224513 lncRNA upstream 188089 86935403 ~ 86937181 (-) True G198334
XM_036957981.1 mRNA downstream 24760 86715060 ~ 86719172 (-) False zpd
XM_036957982.1 mRNA downstream 24760 86715060 ~ 86719172 (-) True zpd
XM_036934371.1 mRNA downstream 28936 86707476 ~ 86714996 (-) False LOC110498636
XR_005038618.1 mRNA downstream 42681 86699341 ~ 86701251 (-) True LOC118942936
XM_036934741.1 mRNA downstream 48730 86684087 ~ 86695202 (-) True LOC118937297
XM_036958037.1 mRNA upstream 137849 86885163 ~ 86887171 (-) False LOC118942938
XM_036958026.1 mRNA upstream 137849 86885163 ~ 86887339 (-) True LOC118942938
XM_021575350.2 mRNA upstream 190981 86938295 ~ 86967493 (-) False LOC110498693
XM_036958066.1 mRNA upstream 190981 86938295 ~ 86967495 (-) False LOC110498693
XM_021575336.2 mRNA upstream 190981 86938295 ~ 86967497 (-) False LOC110498693
TU223618 other downstream 780267 85959845 ~ 85963665 (-) True G197554
TU223542 other downstream 900439 85836299 ~ 85843493 (-) False G197498
TU223547 other downstream 900439 85836299 ~ 85843493 (-) False G197498
TU223549 other downstream 900439 85836299 ~ 85843493 (-) True G197498
TU221798 other downstream 2104176 84609734 ~ 84639756 (-) True LOC110498022
TU224521 other upstream 155722 86903036 ~ 86903956 (-) True G198342
TU225173 other upstream 574825 87322139 ~ 87326469 (-) True G198912
TU228163 other upstream 2859523 89606837 ~ 89609890 (-) True LOC110499346
TU228979 other upstream 3630243 90377557 ~ 90441425 (-) True G202279
TU230773 other upstream 4841898 91589212 ~ 91591049 (-) True G203915

Expression Profile