RNA id: XM_021576886.2


Basic Information

Item Value
RNA id XM_021576886.2
length 2153
RNA type mRNA
GC content 0.47
exon number 9
gene id LOC110499816
representative False

Chromosome Information

Item Value
chromosome id NC_048566.1
NCBI id CM023220.2
chromosome length 103806877
location 92123060 ~ 92129748 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

CAGTTTCAGCATTATCTGTGGTCCATTTGGCCGGTCATCATACTCGCCTTTTTTTGTGTGGAACTCACCacaactagctagctaccacGACACCACAAACATCAACAACAGAAAAACACAGGAAGTAAAACGGAAGCGCGTCACTGCTGGGCTGACCAATCGACGAGGAGTTGTACATTTGATCTAACCAATCACACACAACGGCAGTGGCTTTGAAAGATTGGCGGTCGAAGCGCaaagaatagggtgccgtttggttTTAAAGTTATTGTACTTCACATATAGCTAAATGCGTCAGTATGATGCAGAATAAGGAGAATTGTGATCCTAAAGGCCTACAAAGACCGAGAGTTCAAATACCCTCTGCCCCAGAGACTACAGACAAAAACGCAATTACAGGTCCTAGGAGAGAACCTGTCACCTCTTCCTCCGGTGCCGCTCCGGCAAAGAAATTCACCATCCATGACTTTGACATCGGGCGGCCCCTGGGCAAGGGCAAGTTTGGGAACGTGTACGTTGCGCGGGATAAGAAGCTGAATTTCATTGTGGCACTGAAAGTGCTCTTCAAGTCTCAGATGGAGAAGGAAGGCGTGGAGCACCAGCTCCGAAGAGAGATTGAGATTCAGTCCCATCTTAGACACCCCAACATCCTGCGCTTCTACAACTACTTCCATGACCACTCAAGGGTCTTTCTGATCCTGGAATACGCCCCACGGGGTGAGATGTACAAAGAGCTGCAGAAATGTGGTCGCTTCGATGACCAGCGCACTGCTACGTACATGGAGGAGTTGGCTGATGCGCTGCAGTACTGCCATGAGAGGAAGGTGATACACCGTGACATCAAGCCTGAGAACCTGTTACTGGGTCTCCGTGGGGAGCTGAAGATAGCAGACTTCGGCTGGTCTGTCCATGCCCCATCCTTAAGGCGCCGCACAATGTGTGGAACGCTGGACTACCTGCCCCCAGAGATGATTGAGGGGAAGATCCACGATGAGAAGGTGGACCTCTGGTCCATCGGGGTGCTCTGCTACGAGTGCCTTGTTGGAAACCCCCCATTTGAAACTGCCAGCCACTCCGACACGTACAAACGCATCACAAagGTTGACCTGCAGTTCCCCAAggtggtgtctgatggtgctCGGGACCTGGTCTCTAAGCTGCTCCGCCACAGTCCCTCTATGCGGCTCCCCCTGCAGAGCGTCATCAACCACCCCTGGGTGAAAAGCAACTCCCGACGGGTCCTACCTGTCGTCTTTGCTCCCAAGAAACCCTAACTGTCCAATGTTCCAGCCTGTCTACACTGACACGAAACCCCTAaaccaccatagacctacatattcATATGTTTATAGGTAATTGAATATTCATGTCTATAAATAATTGAACACCACCCAGTACGTTCCAGCCTGCCTTCTACCTGGGTGGAGGACTGACTCTTACCCTGCTGATTGGGAGTTTCCAACTTTCAGGGGTttcactttctttcttttttacttaCCCGGACAACCTTCATCCACAATTTTAGTTTCACTCGCAGATATAGATGGATCTGTTAAGCTGGGACAACCAAAGGACAATAGACTACTCTCATTTTAATTTACATTCAGCCCCAGAACAATTCAAGGGCGCCCTCTACTGTGTGAGATTATTTCTTGCGTTTCTTTAAATAGATTTTATAAATGTACTTTGTCTTTGGTTTCCTTtctccttttttttctcttttcaaCATACCTTTTTATACAGCCTGCATGAAACATCCTCTACAACGCTTATTCTTTGTGTTCCTTTTGCAACTGTTTTGAAATAAATATGGCATTGGGTGCTTCACAGGATGATGCCAAATTGATTTATGGAAAAGAGTGGCAAGTATCAATTAAGGTTATGAATGAAGTAGTGGGTGAAATTCCATGTCTTACCACCCTTGTTCCAGCTGATGTCAGTGTTGTTCTGTGGTCCACTGGGACTATCATTATCCTCAGTCCTGCAAATGATTCCTGTCATGGGGTGACTGTTTTTGTCTGGGAACTGCATGACTGCCGGGGGTGTATCTGAGATGGCcatagccctggtcaaaaggagtgctgTCTATAGTGAATGGATTTGTTACACAGACCGGGACACCGACAGGAAGATAAGGATAACTCTTAATACAT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU231100 lncRNA upstream 891 92121855 ~ 92122169 (+) True G204214
TU231097 lncRNA upstream 4361 92118222 ~ 92118699 (+) True G204211
TU230542 lncRNA upstream 23279 92099357 ~ 92099781 (+) False G203697
TU230544 lncRNA upstream 23279 92099357 ~ 92099781 (+) False G203697
TU230545 lncRNA upstream 23279 92099357 ~ 92099781 (+) True G203697
TU231112 lncRNA downstream 3269 92133017 ~ 92133229 (+) True G204226
TU231130 lncRNA downstream 23652 92153400 ~ 92154538 (+) True G204239
TU231181 lncRNA downstream 71676 92201424 ~ 92202395 (+) True G204277
TU231193 lncRNA downstream 79551 92209299 ~ 92209553 (+) True G204287
TU231216 lncRNA downstream 98329 92228077 ~ 92228341 (+) True G204309
XM_021576866.2 mRNA upstream 6649 92086314 ~ 92116411 (+) False LOC110499798
XM_021576873.2 mRNA upstream 6649 92110500 ~ 92116411 (+) True LOC110499798
XM_021576854.2 mRNA upstream 50743 92065598 ~ 92072317 (+) True borcs5
LOC110502379 mRNA upstream 59352 92057562 ~ 92063708 (+) True LOC110502379
XM_021576837.2 mRNA upstream 73830 92028434 ~ 92049230 (+) True smc1b
XM_021576894.2 mRNA downstream 9332 92139080 ~ 92151823 (+) True LOC110499833
XM_021576940.2 mRNA downstream 258361 92388109 ~ 92392385 (+) True LOC110499877
XM_021576970.2 mRNA downstream 324577 92454325 ~ 92460616 (+) True LOC110499906
XM_036959148.1 mRNA downstream 386076 92515824 ~ 92680198 (+) True LOC110502389
XM_036959163.1 mRNA downstream 512282 92642030 ~ 92643329 (+) True LOC118943603
TU230483 other upstream 98318 92021755 ~ 92024742 (+) True G203646
TU230367 other upstream 275660 91826849 ~ 91847400 (+) True G203551
TU230248 other upstream 451161 91668836 ~ 91671899 (+) True G203438
TU230224 other upstream 498767 91622001 ~ 91624293 (+) True G203414
TU230045 other upstream 583687 91366337 ~ 91539373 (+) True mgat4c
TU231132 other downstream 27527 92157275 ~ 92159903 (+) True G204240
TU231530 other downstream 551598 92681346 ~ 92682355 (+) False G204593
TU231531 other downstream 551598 92681346 ~ 92682313 (+) True G204593
TU232035 other downstream 707676 92837424 ~ 92838127 (+) False LOC110499942
TU232439 other downstream 1241645 93371393 ~ 93388550 (+) False G205404

Expression Profile