RNA id: XM_036934496.1


Basic Information

Item Value
RNA id XM_036934496.1
length 1338
RNA type mRNA
GC content 0.43
exon number 2
gene id LOC118936884
representative False

Chromosome Information

Item Value
chromosome id NC_048566.1
NCBI id CM023220.2
chromosome length 103806877
location 98127948 ~ 98145517 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

gaggaagaagaagaggaagaagaggaagaagatgaagaagaagaggaagaagaggaagaagatgaagaagaagaggaagaagaagaagaagaagaagaggaagaagaagatgaagaagaagaggaagaagaagaagaagaagaagaagaggaagaagatgaagaagaagaggaagaagaagaagaagaagaagaagaagaagaggaagaagatgaagaagaagaggaagaagaagaagaagaggaagaagaagaagaagaagaggaagaagaagagaagaagaagaggaagaagaagaagagagaagaagaagaagaagaagaagaagaagaagaagaagaagaagaagaagaagaggaagaagaagaagaagaagaggaagaagaagaagaagaagaagaagaagaagaagaagaagaagaagaagaagaggaagaagaagaagaagaagaagaagaagaagaggaagaagaagaagaagaggaagaagaagaagaagaggaagaagaagaggaagaagaagaagaagaagaggaagaagaagaagaagaagaggaagaagaagaggaagaagaagaagaagaagaggaagaagaagaagaagaggaagaagaagaggaagaagaagaagaggaagaagaagaagaagaagaagaagaggaagaagaagaagaagaagaagaggaagaagaagaagaagaggaagaagaagaagaagaggaagaagaagaggaagaagaagaagaggaagaagaggaagaagaagaagaggaagaagaagaggaagaagaagaggaagaagaagaagaagaagaggaagaagaagaagaagaagaagaggaagaagaagaagaggaagaagaagaggaagaagaagaagaagaggaagaagaagaagaggaaaaagaagaggaagaagaagaagaagaagaagaagaagaagaagaggaagaagaagaagaagaagaggaagaagaagaagaagaggaagaagaagaagaggaagaagaagaggaagaagaagaagaagaagaggaagaagaagaagaagaagaggaagaagaagaagaagaagaggaagaagaggaggaagaagaagaagaggaagaagaagaagaagaagAGCCAGCCACCCAGAGCCAGCCACCCAGCACCCAGAGCCAGCCACTCAGAGCCAGCCACCCAGAGCCAGCCACTCAGAGCCAGCCACTCAGAGCCAGCCACCCAGAGCCAGCCACCCAGAGCCAGCCACTCAGAGCAAGCCACCCAGAGCCAGCCACCCAGAGCCAGCCACTCAGAGCCAGCCACCCAGAGCCACCCAGCCCAACTGCCCGCTGA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU237871 lncRNA downstream 37511 98085978 ~ 98090437 (-) True G210004
TU237942 lncRNA downstream 45563 98081633 ~ 98082385 (-) True G210042
TU237933 lncRNA downstream 75814 98051490 ~ 98052134 (-) True G210033
TU237924 lncRNA downstream 79504 98044466 ~ 98048444 (-) True G210030
TU237890 lncRNA downstream 93031 98034229 ~ 98034917 (-) True G210012
TU238044 lncRNA upstream 6422 98151433 ~ 98189273 (-) True G210125
TU238070 lncRNA upstream 25381 98170392 ~ 98171401 (-) True G210139
TU238085 lncRNA upstream 54724 98199735 ~ 98200281 (-) True G210152
TU238087 lncRNA upstream 56855 98201866 ~ 98202232 (-) True G210153
TU238101 lncRNA upstream 90313 98235324 ~ 98236594 (-) True G210166
XR_005039179.1 mRNA downstream 367148 97759882 ~ 97760800 (-) False LOC118943870
LOC118944211 mRNA downstream 370285 97757564 ~ 97757663 (-) True LOC118944211
LOC118944208 mRNA downstream 372221 97755630 ~ 97755727 (-) True LOC118944208
XR_005039176.1 mRNA downstream 404765 97721992 ~ 97723183 (-) False LOC118943868
LOC118944209 mRNA downstream 408175 97719674 ~ 97719773 (-) True LOC118944209
XM_021578235.2 mRNA upstream 168012 98313023 ~ 98352485 (-) True LOC110500713
XM_021617578.2 mRNA upstream 279004 98424015 ~ 98426658 (-) False lmo2
NM_001160508.1 mRNA upstream 279329 98424340 ~ 98426375 (-) True lmo2
XM_036960381.1 mRNA upstream 329723 98474734 ~ 98513861 (-) True LOC110500720
XM_036960421.1 mRNA upstream 376987 98521998 ~ 98535690 (-) True edc3
TU237655 other downstream 508736 97618859 ~ 97619212 (-) True G209841
TU237607 other downstream 625554 97501172 ~ 97502394 (-) True G209802
TU237272 other downstream 710760 97416821 ~ 97417188 (-) True G209560
TU236221 other downstream 1705724 96421866 ~ 96422224 (-) True G208658
TU236021 other downstream 1993476 96134077 ~ 96134472 (-) True G208472
TU238753 other upstream 773437 98918448 ~ 98946069 (-) True LOC118943885
TU238756 other upstream 797463 98942474 ~ 98943797 (-) True LOC118943882
TU238870 other upstream 880721 99025732 ~ 99026118 (-) True G210765
TU239331 other upstream 978222 99123233 ~ 99123658 (-) True G211127
TU239562 other upstream 1470665 99615676 ~ 99615914 (-) True LOC118936886

Expression Profile