RNA id: TU237890


Basic Information

Item Value
RNA id TU237890
length 505
lncRNA type intronic
GC content 0.41
exon number 2
gene id G210012
representative True

Chromosome Information

Item Value
chromosome id NC_048566.1
NCBI id CM023220.2
chromosome length 103806877
location 98034229 ~ 98034917 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

GCCTCTATGGAACTGGAAGCTAGATTTCACTTCCTGCTGCTGTTACTGCAATAAATACAACACatgaatagggttctatagggctctggtctaaaatagtgcactatatagggaatagggttctatagggctctggtctaaaatagtgcactatacatagggaatagggtacgatagggctctggtctaaagtagtgcactatatatagggaatagggttctatagggctctggtctaaagtagtgcactatatatagggaatagggttctatagggctctggtctaaagtagtgcactatatagggaatagggttctatagggctctggtctaaagtagtgtactatatagggaataaggttctatagggctctggtctaaagtagtgcactatatatagggaatagggttctatagggctctggtctaaagtagtgcactatatagggaatagggttctatagggctctggtctaaagtagtgcactatatagggaatagggt

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU237876 lncRNA downstream 16362 97973133 ~ 98017867 (-) False G210005
TU237874 lncRNA downstream 16362 98015422 ~ 98017867 (-) False G210005
TU237875 lncRNA downstream 16362 98015422 ~ 98017867 (-) True G210005
TU237877 lncRNA downstream 19107 98010776 ~ 98015122 (-) True G210006
TU237881 lncRNA downstream 35393 97996328 ~ 97998836 (-) True G210009
TU237924 lncRNA upstream 9549 98044466 ~ 98048444 (-) True G210030
TU237933 lncRNA upstream 16573 98051490 ~ 98052134 (-) True G210033
TU237942 lncRNA upstream 46716 98081633 ~ 98082385 (-) True G210042
TU237871 lncRNA upstream 51061 98085978 ~ 98090437 (-) True G210004
TU238044 lncRNA upstream 116516 98151433 ~ 98189273 (-) True G210125
XR_005039179.1 mRNA downstream 273429 97759882 ~ 97760800 (-) False LOC118943870
LOC118944211 mRNA downstream 276566 97757564 ~ 97757663 (-) True LOC118944211
LOC118944208 mRNA downstream 278502 97755630 ~ 97755727 (-) True LOC118944208
XR_005039176.1 mRNA downstream 311046 97721992 ~ 97723183 (-) False LOC118943868
LOC118944209 mRNA downstream 314456 97719674 ~ 97719773 (-) True LOC118944209
XM_036934496.1 mRNA upstream 93031 98127948 ~ 98145011 (-) False LOC118936884
XM_021578235.2 mRNA upstream 278106 98313023 ~ 98352485 (-) True LOC110500713
XM_021617578.2 mRNA upstream 389098 98424015 ~ 98426658 (-) False lmo2
NM_001160508.1 mRNA upstream 389423 98424340 ~ 98426375 (-) True lmo2
XM_036960381.1 mRNA upstream 439817 98474734 ~ 98513861 (-) True LOC110500720
TU237655 other downstream 415017 97618859 ~ 97619212 (-) True G209841
TU237607 other downstream 531835 97501172 ~ 97502394 (-) True G209802
TU237272 other downstream 617041 97416821 ~ 97417188 (-) True G209560
TU236221 other downstream 1612005 96421866 ~ 96422224 (-) True G208658
TU236021 other downstream 1899757 96134077 ~ 96134472 (-) True G208472
TU238041 other upstream 109403 98144320 ~ 98145517 (-) True LOC118936884
TU238753 other upstream 883531 98918448 ~ 98946069 (-) True LOC118943885
TU238756 other upstream 907557 98942474 ~ 98943797 (-) True LOC118943882
TU238870 other upstream 990815 99025732 ~ 99026118 (-) True G210765
TU239331 other upstream 1088316 99123233 ~ 99123658 (-) True G211127

Expression Profile