RNA id: TU237881


Basic Information

Item Value
RNA id TU237881
length 2237
lncRNA type antisense_over
GC content 0.45
exon number 3
gene id G210009
representative True

Chromosome Information

Item Value
chromosome id NC_048566.1
NCBI id CM023220.2
chromosome length 103806877
location 97996328 ~ 97998836 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

gacagcagagtccctgtccatcttccccctggagctaggacagcagagtccctgcccgtcttctgaaaacatctgaaaccctacacCTCTTCAAAAAgcatcttaaataatcccacagcaccccctcctcaaaaaataataataattgtagcAGTAGCTTTGGCTAGTCTGTACAGTAATAGTGTTGTGTATCCAATGGAAGGGCTCAGACACTAGGCCGATGTgtcagggactccagacaatcagcGATTATAAAAAGGGAAAAACCAGCCACCACGGACACCGACGCCTCGCTCCCGGGAAAGCTAAACACCTTCCCCCGCTTTGAGGAAAACAGCATGGGAGCCGCCGACGCAGGCCCCCACCACTCACAAGGACTGTGTGCTCTCGTTCCTCCATGGCGGATGTGAGTAAGTCATTTAAGCGCGTTAACCCtcgccggcccagacggcatcccaaaCCGGGTCCTCGGAGCATGTGaaggaccagctggctggagtgttaacATCCAtttcccagtctgttgtccccacttgtaTCGAGATGTTCATGTGACttagaaagcgaaggtaactgaactaaatggctatcgccccgtagcactcacttctgtcgtcatgaagtgctttgagagactagtcaaggatcatatcacctccatcttacctgacaccctagacccacttcaattcacATACCACTATCACCATTACAGTGTACACTGCCCTCTCTCACCTGGTCAAGATaaatacctacgtaagaatgctgttaaaTCGACGTCAACCtaatatagagtaccagtcaaaagttgacacctactcattcaagggtttttcttttactattatctacattgtagaataatagttaagacatcgacactatgaaataacacatatggaatcatgtagtaaccaaaaaaaaaaaaaagtgttatacaaatcaaaatatattctatatttgaaattcttcaaagtagccaccctttgcctttatgacagctttacCCACTCTTGGCATCGTGTGTCTCCAGTAGAACGGAGTGACTGTGTCGTGTGCCTCTAATATCCGTCTCTCTCACTAAGCATCTGTGTGACTGAgtaagtgagtgagagaggcaggtgggcagggagggaggaaacgtgagggaagggaagagagagggggaacgtgagggaagggaagagagagggggaacgtgagggaagggaagagagagggggaacgtgagggaagggaagagagagggggaacgtgagggaagggaagagagagggggaacggaagagagagagggaacgtgagggaagggaagaggggcGAGAGAAcgtgagggaagggaagaggggcGAGAGAAcgtgagggaagggaagaggggcgagagagagggaacGGAAGGGAAGAGTCAGGGGCGAGACAGGATCTCAGAGGACTAAGCAtctcagcaggcaggcaggcaggcaggcagaaggtcaaCATTCCCTGGATTGTAATAGGGGATTACAGTAAACACAATAGAACAAAATGAGAGGTGGGCCAACGTACTGACTGCCAAGGCAATACGAAGGACAGAGAGTGATGACATGTCATCATTCGGTGCATTGTGCTGCAATAAGCAAGTAATCAAGAAACCGATATTACTCAAGACGTGGAAGCACTATAGATTATCTTAAATTAACATAATGGTTTATTAGGAACGATTACCTTCACAATAGAGTGCCAGTGTGATTGAGCGGTCATGTTGCATGATGGGTAATAATCTACGAACTCAGTTAAAAAGCCAGTCGGTATTCTCCATTCTATCCACTTACACACTGCCTCTAATGGATTCAACCATGCAGAATCTTTCTCCAGACAATGGGCACCCAGCCCATGATTGATTCACCATGATGGACAATGAGCAAATGCGACACCTTTTTCTGTATATTTGGGATCTAAAAATGATACAGACCTTTGACCTATGCACCTCTCCATCGTCGTCTTCTCCTCCGACCCCCAGTATCTTCCTGGTCTTCAGCCGGCTCACCAGATCTGACTGACTGTGTTTCTTCATTAGAGGAGGATGTGACTTAGAGGCCATGGCACAATAACctggagcgagagacagagacacgttTAGCAATTATGGAGTGAATACAAAGCTCTTAGGTTGCATGGTCCCTTCTATGCAGAACAATCATGTGAACAATCAACAAgaaagggagaggtggagaggagagagggtggagatgtACACC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU237902 lncRNA downstream 1875 97992638 ~ 97994453 (-) True G210019
TU237866 lncRNA downstream 27185 97968751 ~ 97969143 (-) True G210000
TU237849 lncRNA downstream 59060 97936615 ~ 97937268 (-) True G209983
TU237848 lncRNA downstream 60908 97934642 ~ 97935420 (-) True G209982
TU237844 lncRNA downstream 66544 97929344 ~ 97929784 (-) True G209978
TU237877 lncRNA upstream 11940 98010776 ~ 98015122 (-) True G210006
TU237874 lncRNA upstream 16586 98015422 ~ 98017867 (-) False G210005
TU237875 lncRNA upstream 16586 98015422 ~ 98017867 (-) True G210005
TU237890 lncRNA upstream 35393 98034229 ~ 98034917 (-) True G210012
TU237924 lncRNA upstream 45630 98044466 ~ 98048444 (-) True G210030
XR_005039179.1 mRNA downstream 235528 97759882 ~ 97760800 (-) False LOC118943870
LOC118944211 mRNA downstream 238665 97757564 ~ 97757663 (-) True LOC118944211
LOC118944208 mRNA downstream 240601 97755630 ~ 97755727 (-) True LOC118944208
XR_005039176.1 mRNA downstream 273145 97721992 ~ 97723183 (-) False LOC118943868
LOC118944209 mRNA downstream 276555 97719674 ~ 97719773 (-) True LOC118944209
XM_036934496.1 mRNA upstream 129112 98127948 ~ 98145011 (-) False LOC118936884
XM_021578235.2 mRNA upstream 314187 98313023 ~ 98352485 (-) True LOC110500713
XM_021617578.2 mRNA upstream 425179 98424015 ~ 98426658 (-) False lmo2
NM_001160508.1 mRNA upstream 425504 98424340 ~ 98426375 (-) True lmo2
XM_036960381.1 mRNA upstream 475898 98474734 ~ 98513861 (-) True LOC110500720
TU237655 other downstream 377116 97618859 ~ 97619212 (-) True G209841
TU237607 other downstream 493934 97501172 ~ 97502394 (-) True G209802
TU237272 other downstream 579140 97416821 ~ 97417188 (-) True G209560
TU236221 other downstream 1574104 96421866 ~ 96422224 (-) True G208658
TU236021 other downstream 1861856 96134077 ~ 96134472 (-) True G208472
TU238041 other upstream 145484 98144320 ~ 98145517 (-) True LOC118936884
TU238753 other upstream 919612 98918448 ~ 98946069 (-) True LOC118943885
TU238756 other upstream 943638 98942474 ~ 98943797 (-) True LOC118943882
TU238870 other upstream 1026896 99025732 ~ 99026118 (-) True G210765
TU239331 other upstream 1124397 99123233 ~ 99123658 (-) True G211127

Expression Profile