RNA id: XR_005039194.1


Basic Information

Item Value
RNA id XR_005039194.1
length 1443
RNA type mRNA
GC content 0.51
exon number 9
gene id LOC110502520
representative False

Chromosome Information

Item Value
chromosome id NC_048566.1
NCBI id CM023220.2
chromosome length 103806877
location 98819781 ~ 98832865 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

ACCAAGCACCGACTACGCGGTCTCAATACACCCCaacttcccctcccctcccccgcgGACTGCCTGGTTTGAGATGTGAGTGGAAGATGTCGGTTTCGGGTCTGAAGGCCGAATTGAAGTTTTTGGAGTCAATTTTTGACCCAAACCACGAACGTTTCAGAATTATCGATTGGAAGCCCGATGAGCTTAGTTGTCAGTTTAATGTAACCGGTGAAAAACTGTTGATAATACATTGCAACATCACGgAGTCATACCCCTCTACACCCCCAATCTGGTTTGTTGACTCTGATGATCCAAGTCTGACAGAGGTGTTGGAGCGCTTGGAAGATGTCAGAAAAGGAACATCTTTGCTCCTGCAGCAGCTGAAGCGTCTCATCTGTGACCTGTGTCGACTGTACAACCTGCCCCAGCACCCAGATGTTGAGATGCTAGATCAGCCCCTCCCTGCTGGGCCCATCAACCCAGAGCGCAAGCATGGACCAGCAGATGAAGTGAcatccgaggaggaggaggaggaagaaatgggcgagCAGGACATTGAAGACCTGGACCACTATGAGATGAAGGAGGAGGAGCCTGTACATGGGAAGAAGTCAGAGGACGACGGGATTGAGAAGgagaACCTGGCCATCCTTGAGAAGATCCGTAAGAACCAGAGGCAGGACCACTTGAACGTAAGTGCTCATTCGGGTGCCGTTTCTGGTTCAGTTCAGGCGTCTGATCGTCTCATGAAGGAACTCAGGGAGATCTACAGATCACAAAGTTACAAGACAGGTGAGAGATCGACAGGTCGGGGTTACAAGACAGGTGAGAGATCGACAGGTCGGGGTTACAAGACAGGTGAGAGATCGACAGGTGAGAGATCGACAGGTGAGAGATCGACAGGTGAGAGATCGACAAGTCAGAGTTACAAGACAGGTGAGAGATCGACAGGTCAGATTTACAAGACAGGTGAGAGATCGACAGGTGAGAGATCGACAAGTCAGAGTTACAAGACAGGTGAGAGATCGACAGGTCGGAGTTACAAGACAGGTGAGAGATCGACAGGTCGGAGTTACAAGACAGGTGAGAGATCGACAGGTCGGAGTTACAAGACAGGTGAGAGATCGACAGGTCGGAGTTACAAGACAGGTGAGAGATCGACAGGTCGGAGTTACAAGACAGGTGAGAGATCGACAGGTCGGAGTTACAAGACAGGTGAGAGATCGACAGGTCGGAGTTACAAGACAGGTGAGAGATCGACAGGTCAGAGTTAAAAGACAGGTGAGAGATCGACAGGTCAGAGTTACAAGACAGGTGAGAGATCGACAGGTCAGAGTTACAAGACAGGTGAGAGATCGACAGGTCAGAGTTACAAGACAGGTGAGAGATCGACAGGTCAGAGTTACAAGACAGGTGAGAGATCGACAGGTCAGAGTTACAAGACAGGTGAGAGATCGACAG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU238813 lncRNA downstream 13579 98809799 ~ 98810003 (-) True G210710
TU238810 lncRNA downstream 36551 98786626 ~ 98787031 (-) True G210707
TU238809 lncRNA downstream 37122 98785611 ~ 98786460 (-) True G210706
TU238754 lncRNA downstream 38019 98784328 ~ 98785563 (-) True G210665
TU238791 lncRNA downstream 55887 98765404 ~ 98767695 (-) True G210693
TU238745 lncRNA upstream 2806 98835671 ~ 98841916 (-) True G210656
TU238832 lncRNA upstream 77071 98909936 ~ 98910293 (-) True G210728
TU238834 lncRNA upstream 100091 98932956 ~ 98955541 (-) False G210730
TU238835 lncRNA upstream 100091 98932956 ~ 98933448 (-) True G210730
TU238843 lncRNA upstream 130886 98963751 ~ 98964109 (-) True G210738
XM_021578108.2 mRNA downstream 15242 98803005 ~ 98808340 (-) True LOC110500630
XM_021578120.2 mRNA downstream 15388 98795959 ~ 98808194 (-) True LOC110500636
XM_036960440.1 mRNA downstream 25794 98795849 ~ 98797788 (-) False LOC110500636
XM_036960449.1 mRNA downstream 100480 98692756 ~ 98723102 (-) False LOC110500839
XM_036960520.1 mRNA upstream 9572 98842437 ~ 98854702 (-) False LOC110500681
XM_021578182.2 mRNA upstream 9832 98842697 ~ 98854773 (-) True LOC110500681
XR_005039209.1 mRNA upstream 43209 98876074 ~ 98892143 (-) False LOC118943884
XM_036960538.1 mRNA upstream 43438 98876303 ~ 98892143 (-) False LOC118943884
XR_005039210.1 mRNA upstream 43797 98876662 ~ 98892143 (-) True LOC118943884
TU238041 other downstream 678065 98144320 ~ 98145517 (-) True LOC118936884
TU237655 other downstream 1204370 97618859 ~ 97619212 (-) True G209841
TU237607 other downstream 1321188 97501172 ~ 97502394 (-) True G209802
TU237272 other downstream 1406394 97416821 ~ 97417188 (-) True G209560
TU236221 other downstream 2401358 96421866 ~ 96422224 (-) True G208658
TU238753 other upstream 85583 98918448 ~ 98946069 (-) True LOC118943885
TU238756 other upstream 109609 98942474 ~ 98943797 (-) True LOC118943882
TU238870 other upstream 192867 99025732 ~ 99026118 (-) True G210765
TU239331 other upstream 290368 99123233 ~ 99123658 (-) True G211127
TU239562 other upstream 782811 99615676 ~ 99615914 (-) True LOC118936886

Expression Profile