RNA id: TCONS_00028084


Basic Information

Item Value
RNA id TCONS_00028084
length 1787
RNA type mRNA
GC content 0.45
exon number 8
gene id XLOC_014094
representative False

Chromosome Information

Item Value
chromosome id NC_007130.7
NCBI id CM002903.2
chromosome length 48449771
location 26828502 ~ 26844582 (+)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

ATTGGCTGCAGTCAGCTGTGAATGCTGTCGTTTTGCTAGCAGGTTTGTTGAAATGGCTTTAAATGCATGTTGATTGGTGTTCTCTGGGTCATGATGGTCAAACATTAACAGCTTTCTGAAGTGATGTAATGTATGCAAAGGTTCATGCGGATTGATGTATAAAAACACTGCTTGCAATAACTGTGAAACACATTCAGATTGGCATGCAGATTACTGTAATTCAGAGAGACTGCtgcccattttctttatctttgaGATATAGCATAACGTCTTCCTTATACGGTCTCATGTGAAACTGTTAAAAGAGAAGTTGACTGCAAGATTGTTGTTTCCTGTTCTTAAACAGACAGTGAACTGTGCCGAAATCATCAACTGAAACAAGCTGGGCCCGAACCACAGCAGGCTCTGACAGTGGCCGTCACCATGGAGGAGAGGGAGCGGCAGTGTAACAGAGAGGAAAAATCTGATGGCAAATCCCCCACAGGACAGTCACGCACAGCAGGAGAACCAGGCACATCATCCACATGGAGGAACGGTACATATCACTCCAATTCATCCAGTGTTCATAAAAAACAGCTAAACCAAATCATCAAAGAGTACAAATGTGACTGCAGCATGATTTTTACCACCCTGCTTTATTGGCCTCAACTAAACAATAGCACTGAAATGCTTGCAATGCTCTAATGACACTTTCATAACACGTAGATGTTTCTGAAATGCCACAGGAATTAGAAATATGCCTTTCTTTTATATGTATAACTTTCATTTTCATAATTAATAGGGCGTTTAAATCCTGCCTAAattgttttattgcattaaaGCTCACCTGGTGTGTTTTTTTGTCAGGTCAGTGTGTGGCATCAGTCCCCACGTCCTCCTGGTTCACTCCTAAATTTGACTTCTCACGCTGCAGGACTCTTCTGGAAACAAAAGGCTTCCAGATCCCAGCAGATAATTTTGAGGGTCCACTTGAATTAGCGCTGGACCATCCGTCCGTCAGAAGATATCTGCTTTTCAACTCATATGTTTTTAATTTCATCATGGCACCGATTTTGTACATGGTGCTGTGGTGCGCTGTGTATTCAACCCTTCACATGTACCTTCAAAGCAGCACAGCAAGCTTCTGGGTGCTCTGTCTGTGTGTCAGCCTGGTGTCCATCATCCTCACTGCTGTCATCAGCCTCATCTTCCACTACAGCAATAGAGAGATCAACATGAACACAGATGTGCGCTTGGTGGGGGTTAATGAGCGCATGATCAGACACGGGCTGTTGTTAGGAGTGGCTGACTGGGTGCATAAATGCAGAGGAAAACTGCAGCTCTTCTGTGTATACTGGGACTTGTCCCCATGTCTGAGGTCTCTGACTGAATCCCTAGACAACATGAGTTTTTTCAGTGATCAAGTACAGAACAAACTCAAGAAAAGAATGTCGCACCTAGTTTTAGTGACCGAGGTTACGACTCTGGATCCCGAGGCTGGATTACAGGACGAGGGGTTTCCAGAGGAGGAGCAACCCCTGCTGGTGGCGGGACGAGAGCGAAGCGAATCCATCAGTCAACGGGATGACTCCAAACTCACAAAAAACTTCAGCCTGATGCCCAACACCAGGCTTTCTAATCAGGTTATTGCTCAGCAGCTCCTGATGGCCTACAGTGCACTTTATGTTCGACTATTGGTATCAAACAAGCTAACTGTTCCATCCCATCGGCCTTCAGGTGCAGGGAAAAATCACTGTGGTCCCAGTGTTTGTCTGTGCGAGTATGTGGAGCTCAAGGCCCTGCAGTAG

Function

GO: NA

KEGG: NA

Ensembl:

ensembl_id ENSDART00000183654

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00028060 lncRNA upstream 1675925 25151416 ~ 25152577 (+) True XLOC_014079
TCONS_00029915 lncRNA upstream 1767535 25003517 ~ 25060967 (+) True XLOC_014078
TCONS_00029914 lncRNA upstream 1844994 24959229 ~ 24983508 (+) True XLOC_014077
TCONS_00028059 lncRNA upstream 1893207 24922531 ~ 24935295 (+) True XLOC_014076
TCONS_00028055 lncRNA upstream 1942557 24885116 ~ 24885945 (+) True XLOC_014074
TCONS_00029916 lncRNA downstream 189291 27033873 ~ 27041528 (+) True XLOC_014097
TCONS_00028095 lncRNA downstream 509763 27354345 ~ 27354866 (+) True XLOC_014098
TCONS_00028103 lncRNA downstream 1042736 27887318 ~ 27892055 (+) True XLOC_014102
TCONS_00029917 lncRNA downstream 1130083 27974665 ~ 27976483 (+) True XLOC_014104
TCONS_00029918 lncRNA downstream 1269932 28114514 ~ 28187683 (+) False XLOC_014105
TCONS_00028081 mRNA upstream 98252 26718074 ~ 26730250 (+) True XLOC_014092
TCONS_00028080 mRNA upstream 98923 26714949 ~ 26729579 (+) False XLOC_014092
TCONS_00028079 mRNA upstream 105133 26681848 ~ 26723369 (+) False XLOC_014092
TCONS_00028078 mRNA upstream 154647 26640096 ~ 26673855 (+) True XLOC_014091
TCONS_00028076 mRNA upstream 201189 26424734 ~ 26627313 (+) True XLOC_014089
TCONS_00028087 mRNA downstream 78198 26922780 ~ 26932829 (+) False XLOC_014095
TCONS_00028086 mRNA downstream 78198 26922780 ~ 26932829 (+) False XLOC_014095
TCONS_00028088 mRNA downstream 78528 26923110 ~ 26928330 (+) False XLOC_014095
TCONS_00028089 mRNA downstream 78692 26923274 ~ 26931297 (+) False XLOC_014095
TCONS_00028090 mRNA downstream 78706 26923288 ~ 26931994 (+) False XLOC_014095
TCONS_00028082 other upstream 22620 26805766 ~ 26805882 (+) True XLOC_014093
TCONS_00028077 other upstream 251794 26576594 ~ 26576708 (+) True XLOC_014090
TCONS_00028073 other upstream 635566 26192822 ~ 26192936 (+) True XLOC_014087
TCONS_00028068 other upstream 1316940 25508793 ~ 25511562 (+) True XLOC_014083
TCONS_00028062 other upstream 1653110 25175272 ~ 25175392 (+) True XLOC_014081
TCONS_00028091 other downstream 84042 26928624 ~ 26931433 (+) True XLOC_014095
TCONS_00028109 other downstream 1298553 28143135 ~ 28143254 (+) True XLOC_014106
TCONS_00028114 other downstream 1446794 28291376 ~ 28315953 (+) False XLOC_014108
TCONS_00028117 other downstream 1477097 28321679 ~ 28331097 (+) False XLOC_014108
TCONS_00028118 other downstream 1486645 28331227 ~ 28334164 (+) True XLOC_014108