RNA id: TCONS_00028087


Basic Information

Item Value
RNA id TCONS_00028087
length 2928
RNA type mRNA
GC content 0.40
exon number 11
gene id XLOC_014095
representative False

Chromosome Information

Item Value
chromosome id NC_007130.7
NCBI id CM002903.2
chromosome length 48449771
location 26922780 ~ 26932829 (+)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

TGGACATTTAAACTTGTAAAGAgctaattaaaactttttaagacccgCAGAAGACCTGTCAAGATGCTCATAAACTCATTTCATTACTGTCAGGAGTTTGGTTATCAATGTAGCTGCAGAGCTGGCTGTCACGTGAGCGACTTATGATTCATAGCAAGTAAATACTGAGCTGGCCCCATATATTATTACTCCGTGAAAGTCAAACACTTGAAACTGCAGATCTTTGATGAAACAGTAATAATATATTTTCCATACCTATTTTGTCCATGTCACTCAGCAGTTCTCCAGTTTCAATAAAGTTTCAGGCAGTCCTACAGGAAGCTGCGCAGAAGTAATGGGACGGAagtatatgcattttattttattttgtgctttATAATTTAACGATCTACGTGTGTGATCTAAATCACACTAAAGTATTGGTGCACTTTAAATAATAGATACTTTAAAATTATCTCAGTATGGACAAACGATTAATTTGACCTCCTTTCTCGGATGACAACAGATTACGTCATATTTACGCGCCAGGTCCAGCAAAATGGCAATATTTCCCAGTTCATTAACAGAAGACGAAGAAGCGCTGCAAAAGAAGTATGCTAAACTGAAGAAAAAGAAGAAGGCCCTAATGGCTTTGAAGAAACAGAGCTCCACCAATCAGACGAGTCAGACTGGACTGAAACGCACTTTGTCAGATCAGCCGGTGGTGGACACAGCGACAGCCACAGAGCAGGCCAAAATGCTAATCAAATCTGGGGCAATCAGTGCCATCAAATCAGAAAACAAGAACTCGGGGTTCAAGCGCTCCAGAATGCTTGAGGGTAAACTGAAAGATCCTGAGAAAGGTCCTGCCCCGGCATTCCTGCCATTTCAGAGGAGCGTGTCCACAGATGAGGAGCCTCCTGATTCCGCTAAACGAATCCACAGGAAATCCCTTTACGAGAGttttgttcctggagatcgatcTCGTGATGAAGAGGCAGGAATGCCAAGTCGAGATTCTGAGCGTGACCGGGAAAGGGAGATGGACTGGGAGAGAGATCGAgaaagagacagagacagagaaagGGACCGTGAAAGAGGTCGAGAGAGAGAACGGGACCGGGAACGGGAACGAGACAGGAGCCGGGATGGAGAAAGAGATCGAGAGAGGGACCGGGATCGAGACAGAGAacgagacagagagagagatggacCCTACAGACGGTCAGACTCGTATCCAGAGCGCAGAGGTGTGCGCAAAGGAAACACAGTGTATGTGTACGGCACCGGTTTAGTGGAGGACAGCTTGCGCACAGCCTTTGCTCAGCACGGCAACATCATTGACCTTTCAATGGACTCTCCACGCAATTGCGCTTTTGTCACCTTTGAGAAGATCGAATCAGCAGACCAGGCTGTGGCGGAGCTGAATGGCACCACTGTGGGTGACGTCAACATCAAAGTCAGCATTGCCAGGAAGCAGCCCATGCTGGATGCCGCCACAGGGAAATCTGTCTGGGCTTCTCTTGCGGTGCAGAACAGTGCCAAGGGCTCGTACAGAGACAAACGGAGCCAGGTCGTCTACAGTGAAGATTTCCTTTAGTTACTTgacatttgcttttgttttaaaacgtCGGCGTGAGATTTTGTCTAGGTACAGCAGACATGACTTTCACAGAAGTAAATCCTACTTTTCGGTTATTAATAACGCTCAGTGTGGACATTAAGCCCACTCATGTTTATGTCATTGTGTTCAATAAATCAGTCAATAAAATTTTCCATCAACATGTGCGGGGTGACGCTTCATAATATGTGCAAACACAATCGATTCTgattgtaaatgtgcaaaaaatcagttttaatgaAACGTCAATAAAGCATACCTTCGGAGGCAGAAATTAAAAGCCAGGCTGAGCTTTGAATTGTTGGGTTTCTGCTGTGTGGATCAAGCTTCTCCCTGCAAAAATCAACAACATTAGATGCTATTGATGAAATGAGCTGTAGTTCAGACACTGCAGTGCTCCAGCATTGCCTAAGGGGAAACAGAATACTGAGAATACAAATGCACAGGCATGCACTGTTACATAAACCATTTgcatacagaaataaataaccTTATATACACACATTACTCTGTAGGCCtgtgttttttttccctatttcTTGCCCCATAAAATAAGAATTTGTTTGAGAAAGAATATcatatcggtaacactttagaataactatccgttataactagttattagaccattaataaactgttagttaacaagttataaatgacttgttaaacaaaagttaatagtttgttaattatttacaactgtaccttatagatggctaatagataacttacaagccgttAGTTGACAAGTTGTAAATGGCTTCTTAActgtgttttaattatttataacgttacctaataaattagtaatagatcatgaacaagctgttagtaaataacttaataaaggcttgttaagtatcagttaatagtgtatatatgttattgggacgttattctaaagttgcagctattcttcatttattaactgttagtaaatgaggaatagttgcaactttagaataacgtcccaataacatgcttaagctaataactaacacttaactattatatttactcacactttacagatcagttgttcaccctataataacaccagtgaaacttttttattagaccactggtgtaattttaaatttttatttattttgttttcatgtttagcacttcatgggtttgtattcttgcatactgctgtactgccatgtcatggttcagtatgtgtgtttctatacattaaagacaacttttaacatttcatctgtggagtttctttggtaaaacacagcacacagaaaagcctataagtggaacaaggtttagaaacaaacattttatattttaaatattacatcaaatttctg

Function

GO:

id name namespace
GO:1902038 positive regulation of hematopoietic stem cell differentiation biological_process
GO:0006355 regulation of transcription, DNA-templated biological_process
GO:1901534 positive regulation of hematopoietic progenitor cell differentiation biological_process
GO:0034244 negative regulation of transcription elongation from RNA polymerase II promoter biological_process
GO:0032021 NELF complex cellular_component
GO:0003676 nucleic acid binding molecular_function
GO:0003723 RNA binding molecular_function

KEGG:

id description
ko03021 Transcription machinery

ZFIN:

id description
ZDB-GENE-040718-69 Predicted to enable RNA binding activity. Acts upstream of or within positive regulation of hematopoietic stem cell differentiation. Predicted to be located in nucleus. Predicted to be part of NELF complex. Orthologous to human NELFE (negative elongation factor complex member E).

Ensembl:

ensembl_id ENSDART00000188978

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00028060 lncRNA upstream 1770203 25151416 ~ 25152577 (+) True XLOC_014079
TCONS_00029915 lncRNA upstream 1861813 25003517 ~ 25060967 (+) True XLOC_014078
TCONS_00029914 lncRNA upstream 1939272 24959229 ~ 24983508 (+) True XLOC_014077
TCONS_00028059 lncRNA upstream 1987485 24922531 ~ 24935295 (+) True XLOC_014076
TCONS_00028055 lncRNA upstream 2036835 24885116 ~ 24885945 (+) True XLOC_014074
TCONS_00029916 lncRNA downstream 101044 27033873 ~ 27041528 (+) True XLOC_014097
TCONS_00028095 lncRNA downstream 421516 27354345 ~ 27354866 (+) True XLOC_014098
TCONS_00028103 lncRNA downstream 954489 27887318 ~ 27892055 (+) True XLOC_014102
TCONS_00029917 lncRNA downstream 1041836 27974665 ~ 27976483 (+) True XLOC_014104
TCONS_00029918 lncRNA downstream 1181685 28114514 ~ 28187683 (+) False XLOC_014105
TCONS_00028085 mRNA upstream 78198 26828502 ~ 26844582 (+) False XLOC_014094
TCONS_00028084 mRNA upstream 78198 26828502 ~ 26844582 (+) False XLOC_014094
TCONS_00028083 mRNA upstream 78198 26828502 ~ 26844582 (+) True XLOC_014094
TCONS_00028081 mRNA upstream 192530 26718074 ~ 26730250 (+) True XLOC_014092
TCONS_00028080 mRNA upstream 193201 26714949 ~ 26729579 (+) False XLOC_014092
TCONS_00028092 mRNA downstream 86603 27019432 ~ 27024019 (+) True XLOC_014096
TCONS_00028093 mRNA downstream 407019 27339848 ~ 27357682 (+) False XLOC_014098
TCONS_00028094 mRNA downstream 409650 27342479 ~ 27358545 (+) False XLOC_014098
TCONS_00028096 mRNA downstream 515796 27448625 ~ 27453644 (+) True XLOC_014099
TCONS_00028097 mRNA downstream 546734 27479563 ~ 27506368 (+) False XLOC_014100
TCONS_00028082 other upstream 116898 26805766 ~ 26805882 (+) True XLOC_014093
TCONS_00028077 other upstream 346072 26576594 ~ 26576708 (+) True XLOC_014090
TCONS_00028073 other upstream 729844 26192822 ~ 26192936 (+) True XLOC_014087
TCONS_00028068 other upstream 1411218 25508793 ~ 25511562 (+) True XLOC_014083
TCONS_00028062 other upstream 1747388 25175272 ~ 25175392 (+) True XLOC_014081
TCONS_00028109 other downstream 1210306 28143135 ~ 28143254 (+) True XLOC_014106
TCONS_00028114 other downstream 1358547 28291376 ~ 28315953 (+) False XLOC_014108
TCONS_00028117 other downstream 1388850 28321679 ~ 28331097 (+) False XLOC_014108
TCONS_00028118 other downstream 1398398 28331227 ~ 28334164 (+) True XLOC_014108
TCONS_00028122 other downstream 2270313 29203142 ~ 29203257 (+) True XLOC_014111

Expression Profile

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