RNA id: TU129061


Basic Information

Item Value
RNA id TU129061
length 444
lncRNA type inter_gene
GC content 0.39
exon number 2
gene id G113004
representative True

Chromosome Information

Item Value
chromosome id NC_048566.1
NCBI id CM023220.2
chromosome length 103806877
location 10723977 ~ 10727044 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

ataaaagccatttcccctcactactccctctctgtgttataaaagccatttcccctcactactccctctctgtgttataaaagccatctcccctcactactccctccctctctctgtgttataaaagccatttcccctcactactccctctctctctgtgttataaaagccatttcccctcactactccctccctctctgtgttataaaagccatttcccctcactactccctctctctgtgttataaaagccatctcccctcactactccctctctgtgttataaaagccatttcccctcactactccctccctctctgtgttataaaaagccatttcccctcactactccctccctctctgtgttataaaagccatttcccctcactactccctctctgtgttataaaagccatttcccctcactactccctccctctctgt

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU129006 lncRNA downstream 83507 10640255 ~ 10640470 (-) True G112960
TU129005 lncRNA downstream 85277 10638384 ~ 10638700 (-) True G112959
TU129002 lncRNA downstream 88374 10635396 ~ 10635603 (-) True G112956
TU129001 lncRNA downstream 89004 10634723 ~ 10634973 (-) True G112955
TU128998 lncRNA downstream 95584 10628160 ~ 10628393 (-) True G112952
TU129091 lncRNA upstream 32671 10759715 ~ 10762095 (-) True LOC118937678
TU129107 lncRNA upstream 36496 10763540 ~ 10765545 (-) True G113015
TU129118 lncRNA upstream 66847 10793891 ~ 10794318 (-) True G113026
TU129121 lncRNA upstream 74755 10801799 ~ 10802578 (-) True G113029
TU129123 lncRNA upstream 82543 10809587 ~ 10809812 (-) True G113031
NM_001124345.1 mRNA downstream 5597 10715305 ~ 10718380 (-) True ccka
XM_036937571.1 mRNA downstream 112530 10504271 ~ 10611447 (-) False LOC110520767
XM_036937563.1 mRNA downstream 112531 10401919 ~ 10611446 (-) False LOC110520767
XM_036961607.1 mRNA downstream 369732 10316778 ~ 10354245 (-) True LOC118944052
XM_036937553.1 mRNA downstream 414684 10300705 ~ 10309293 (-) True LOC110507471
NM_001165087.1 mRNA upstream 9700 10736744 ~ 10808233 (-) False eif3h
XM_036937655.1 mRNA upstream 32315 10759359 ~ 10762238 (-) False LOC118937678
XM_036937671.1 mRNA upstream 32315 10759359 ~ 10762238 (-) False LOC118937678
XM_036937673.1 mRNA upstream 32316 10759360 ~ 10762237 (-) False LOC118937678
XM_036937676.1 mRNA upstream 32316 10759360 ~ 10762237 (-) False LOC118937678
TU129012 other downstream 5319 10648265 ~ 10718658 (-) True G112965
TU128973 other downstream 153169 10570442 ~ 10570808 (-) True G112928
TU128520 other downstream 377042 10346471 ~ 10346935 (-) True G112567
TU128425 other downstream 426978 10218152 ~ 10296999 (-) True G112491
TU128303 other downstream 720334 10000730 ~ 10003643 (-) False LOC110493960
TU129027 other upstream 9685 10736729 ~ 10808244 (-) True eif3h
TU129220 other upstream 293997 11021041 ~ 11021734 (-) True G113096
TU130068 other upstream 483429 11210473 ~ 11218154 (-) True G113688
TU130103 other upstream 583799 11310843 ~ 11312658 (-) True G113712
TU130124 other upstream 595997 11323041 ~ 11325612 (-) True G113720

Expression Profile