RNA id: TU129027


Basic Information

Item Value
RNA id TU129027
length 735
RNA type TUCP
GC content 0.52
exon number 5
gene id eif3h
representative True

Chromosome Information

Item Value
chromosome id NC_048566.1
NCBI id CM023220.2
chromosome length 103806877
location 10736729 ~ 10808244 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

ctctctttcctccctctttttTTCGGCGTGTTTCAGAATGGCTACTCGCAAGGAAACACCGTCGACACCAACCGCCCCGATGGCTTCCACGTCTCCGGGAGCAACTTTAGATTCACCCGTGAAACAGATTCAGATCGAAGGGCTGgtggTCCTGAAGATGATCAAGCATTACCAGGAGGAGGGTCAGGGTAGTGAGGTGGTTCAGGGTGTACTACTGGGCCTGGTAGTGGAGGACAGGTTAGAGATCACCAACTGTTTCCCCTTCCCCCAACACACTGAGGACGACGCCGACTTTGACGAAGtCCAGTATCAGATGGAGATGATGCGGTCTCTTCGTCATGTCAACATTGACCATCTTCATGTGGGCTGGTACCAGTCAACCTATTATGGATCATTTGTCAGCCGGGCCCTGCTGGACTCTCAGTTCAGTTACCAGCACGCCATCGAGGAGTCTGTCGTTCTCATCTACGATCCCATTAAGACCGCCCAGGGCTCCCTGTCCCTGAAGGCTTACAGGTTAACACCCAAACTGATGGAGATCTGCAAGGAGAAGGACTTCTCAGCCGAGGGatTGAAGAAGGCCCTGATTGGTTTTGAGCACATGTTTGAGGAGGTTCCCATCGTGATCAAGAACTCCCACCTGATCAACGTTCTGATGTGGGAACTGGAGGAGAAGTGTACTGTGGCCGACAAACACGAACTGCTCAACCTCTCCAGCAGGTATGTGACTTGGTG

Function

GO:

id name namespace
GO:0001731 formation of translation preinitiation complex biological_process
GO:0005852 eukaryotic translation initiation factor 3 complex cellular_component
GO:0033290 eukaryotic 48S preinitiation complex cellular_component
GO:0016282 eukaryotic 43S preinitiation complex cellular_component
GO:0003743 translation initiation factor activity molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU129061 lncRNA downstream 9685 10723977 ~ 10727044 (-) True G113004
TU129006 lncRNA downstream 96259 10640255 ~ 10640470 (-) True G112960
TU129005 lncRNA downstream 98029 10638384 ~ 10638700 (-) True G112959
TU129002 lncRNA downstream 101126 10635396 ~ 10635603 (-) True G112956
TU129001 lncRNA downstream 101756 10634723 ~ 10634973 (-) True G112955
TU129123 lncRNA upstream 1343 10809587 ~ 10809812 (-) True G113031
TU129129 lncRNA upstream 20999 10829243 ~ 10829584 (-) True G113036
TU129130 lncRNA upstream 22166 10830410 ~ 10830648 (-) True G113037
TU129131 lncRNA upstream 24219 10832463 ~ 10832687 (-) True G113038
TU129030 lncRNA upstream 29398 10837642 ~ 10839764 (-) True G112983
NM_001124345.1 mRNA downstream 18349 10715305 ~ 10718380 (-) True ccka
XM_036937571.1 mRNA downstream 125282 10504271 ~ 10611447 (-) False LOC110520767
XM_036937563.1 mRNA downstream 125283 10401919 ~ 10611446 (-) False LOC110520767
XM_036961607.1 mRNA downstream 382484 10316778 ~ 10354245 (-) True LOC118944052
XM_036937553.1 mRNA downstream 427436 10300705 ~ 10309293 (-) True LOC110507471
XM_036937853.1 mRNA upstream 3269 10811513 ~ 10826012 (-) True LOC110512108
XM_036937860.1 mRNA upstream 32322 10840566 ~ 11001122 (-) False LOC110511734
XM_036937865.1 mRNA upstream 32322 10840566 ~ 11001122 (-) False LOC110511734
XR_005035034.1 mRNA upstream 32322 10840566 ~ 11001122 (-) True LOC110511734
XR_005035042.1 mRNA upstream 71612 10879856 ~ 10881390 (-) True LOC118937685
TU129012 other downstream 18071 10648265 ~ 10718658 (-) True G112965
TU128973 other downstream 165921 10570442 ~ 10570808 (-) True G112928
TU128520 other downstream 389794 10346471 ~ 10346935 (-) True G112567
TU128425 other downstream 439730 10218152 ~ 10296999 (-) True G112491
TU128303 other downstream 733086 10000730 ~ 10003643 (-) False LOC110493960
TU129220 other upstream 212797 11021041 ~ 11021734 (-) True G113096
TU130068 other upstream 402229 11210473 ~ 11218154 (-) True G113688
TU130103 other upstream 502599 11310843 ~ 11312658 (-) True G113712
TU130124 other upstream 514797 11323041 ~ 11325612 (-) True G113720
TU130157 other upstream 541098 11349342 ~ 11352741 (-) False G113733

Expression Profile