LOC110512108 (rad21)


Basic Information

Item Value
gene id LOC110512108
gene name rad21
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048566.1
NCBI id CM023220.2
chromosome length 103806877
location 10811513 ~ 10826012 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_036937853.1
AGACTCCTCCCTTCGCCATGTTTCGGGCTGTAAACATCCTGCTGATTTTAAAAGGACACTGAGCGGGAGGAAGTCTACTGGCGCCATCTTGACTCTTTTCATGAGTACAACAGGAAGAGACAATCGCTGGGAGTAATTGCATAATCATTGATATTTATTTTGAAAGGGGGGGTACAATCGGTGCTCTGACCCCCGGTTCTTCAAGAGCTAGCAACCAACCGGGGCAATGTTCTACGCCCACTTTGTCCTGTCCAAACGTGGGCCTCTGGCCAAGATCTGGCTAGCGGCCCACTGGGACAAGAAGCTGACCAAGGCTCATGTGTTTGAATGTAACCTAGAGAGCAGTGTGGAGAGCATTATCTGCCCCAAGGTGAAGATGGCGCTGAGGACCTCAGGTCACCTCCTGCTCGGTGTGGTGAGGATCTACAACAGGAAGGCCAAGTACCTCCTGGCTGACTGTAATGAAGCCTTCATCAAGATCAAGATGGCTTTCAGACCAGGTGTGGTGGATCtgccagaggagaacagagaggctGCCTACAACGCTATCACCCTGCCGGAGGATTTCCACGACTTTGACCAACCCTTACCTGACCTTGACGACATAGACGTCGCCCAGCAGTTCACCCTGAACCAGAGCAGAGTGGAGGAGATCACCATGAGGGAGGAGGTGGGGAACCTCAGCCTCATGCAGGACAATGACTTTGCTGACTTTGGCATGGATGACCGTGAGATGATGAGGGTAGAGGGAGGCTTTGAAGAGGACATCATCCATGGAGCGACAGCCTCCAATCTGCTGCTGGAGGCAGAGCCTGGGCCTGCTCACCTGCCGGACAAGTCCAACCACCTGGAGTACGACGACTTTGGAGACACCATGGAGAACAACGAAGGAGGAATGCTGGTGGATAAACTACTGTCCCAGGAGGATGGGGGTGGTATATTTGACGACCCTCCAGCCATCACAGAGAGCGTGATTCCCCCAGACCATGGAGACGATGAGGACGACTTCGACAACCTACAGTCACCGGGTCCAGACAGTCCCGACTCCGGCCCAGTCGAGCCCCTGCCGGCCATGCAGGACCAGACGGAACAGACCACTCTGGTCCACAATGAGGAAGAGGCTTTTGCCTTGGAGCCCATCGACATCACTGTGAAAGAGACCAAggcgaagaggaagaggaagctgATTGTCGACAACCTGAAGGAGCTGGACAGTAAGTCGATCCGCGCCCAGCTCAGCGACTACTCGGACATCGTGACCACGTTGGACCTGGCCCCTCCCACCAAGAAGCTGATGATGTGGAAAGAGACCGGAGGAGTGGAgaaactcttctctctccccGCACAGCCGCTCTGGAACAGCAAACTGCTGAAgATGTTCACGCGCTGCCTGACTCCTCTGGTGCCCGatgagatgaggaagaggaggaagggaggagaggctgATAGTCTGGATGAGTTCCTGAAGGACCTGGAGAACCCCGAGGTGCCCAGAGAGGAGGCTCTGTCTGGCAGGGACGTTATTGaccagACCATCATGGAGGAACCCAGTATGCTGCAGGCCTCAGCCATGGAGGGGAGTAGGACCACCCTGGATGAGACTGTCATGCCACCACCGTCCACCCCACACGGACTCAAACACAAGGAGGCTGGCCTGCCTATGGGAGCCCAGGAGCCTCAGGCTGATCTCTCAGTCCTCTCGTTAGCTCAGGCTGATCAGTCGGTCCTCTCCATGGCCCAGGTAGACCTGCCCCCAGAGGAGAGCCTCAACCTCACACAGCTGGTGCCTGAGCTGGACCTGCTGGACAAGGAGAAGAAGGACAAGGATGACAGTGATGAGGAGgaggaggagggtgatcCAACTCAGGAccaggaggagaagaggtggaaCAAGAGGACCCAGCAGATGCTGCATGGCCTTCAGcgAGTCATGGCCAAGACGGGAGCCGAGCAGGTCAGCTTGTTGGAGCTGTGCCGAGACAACAACAAGAAGCAGGCGGCCGCCAAGTTCTACAGTTTCCTGGTCCTGAAGAAACAGCAGGCCATCGAGCTCAACCAGACCGAGCCTTACAGTGACATCATCGCTACAGCCGGACCAAGATTCCACCTGGTTTAGACACTGCCCGAGGTCCAAATGGCACTGGTTCCTATACAgcgccctacttttgaccagagcctccTAGGGttctgggcaaaagtagtgcactatatagggaatatggtgccatttggaaatgTCTTTTTCACTATTTTTATGTATGTTTtaggttttttttttgcatttttttttgttggggggggtGTCCTAAATGCTAACTTTGAAAAGGATTGTACTGTATCTACCACCAACTGAATCATGCAGTATTGTGTTTTTTTAAGTGAGAAATGCATTTATCCAGTATATTTATATTTCCTGTCAAGttcctttttttttctcttcattTTGTAAAGCTTTCCGACCACACTAGTTGTttgttttggggtgggggggagggggagggtgttGGAACAATACATGTCCCACTGCTCTGTAACGGTCAAATTCATCAAAAGATTCATCAAATTTTAGTCTCCAATcaagaatccccccccccccccaaaaaaaatggtgTAAGAACATTTAGTCTTTTATGCTTACATACATGCTGTTTACAGGCACTGTTATATCATGAGAGAAATGGAATAAGTGCTCTTCACCTCGACTTCTTCCTCATTGCACTTGACATAAAATCCtggttttctttaaaaaaaaaaaaatcatctttttttgttatttctgttGATAAATTGGCTATATTACGACTAGCATTGAATTGTATTGTTTAGGTGTATAATAATGCCCATTTATTCCCGTTGCGTTTTGTACCTCCACagctattgttgttgttgttgcataaaGAAACTAGACATGTTTCAATGAAAGTTGACGATCCCATGTTTTTAAGTCTTATGGTTAACTAGCTGTTGTGATACTTCTGTAAAGAATTTGAAATAAAAGTGTTTTAATTACTTGG

Function

symbol description
rad21 Predicted to enable chromatin binding activity. Involved in positive regulation of sister chromatid cohesion; protein localization to chromatin; and regulation of transcription by RNA polymerase II. Located in nuclear matrix and nucleoplasm. Part of cohesin complex. Implicated in Cornelia de Lange syndrome 4.

NR:

description
Double-strand-break repair protein rad21 homolog

GO:

id name namespace
GO:0000228 nuclear chromosome cellular_component

KEGG:

id description
K06670 SCC1, MCD1, RAD21; cohesin complex subunit SCC1

RNA

RNA id representative length rna type GC content exon number start site end site
XM_036937853.1 True 3014 mRNA 0.50 14 10811513 10826012

Neighbor

gene id symbol gene type direction distance location
eif3h LOC100196680 coding downstream 3280 10736729 ~ 10808244 (-)
LOC118937678 NA coding downstream 49275 10759359 ~ 10762238 (-)
ccka cck-l coding downstream 93133 10715305 ~ 10718380 (-)
LOC110520767 ulk4 coding downstream 200066 10400640 ~ 10611447 (-)
LOC118944052 NA coding downstream 457268 10316778 ~ 10354245 (-)
LOC110511734 LOC105023503 coding upstream 14554 10840566 ~ 11001122 (-)
LOC118937685 NA coding upstream 53844 10879856 ~ 10881390 (-)
LOC118937688 NA coding upstream 232972 11058263 ~ 11060049 (-)
lratd2b LOC106573048 coding upstream 339101 11165113 ~ 11168638 (-)
prelid3a LOC106593866 coding upstream 422025 11196145 ~ 11261793 (-)
G113031 NA non-coding downstream 1701 10809587 ~ 10809812 (-)
G113029 NA non-coding downstream 8935 10801799 ~ 10802578 (-)
G113026 NA non-coding downstream 17195 10793891 ~ 10794318 (-)
G113015 NA non-coding downstream 45968 10763540 ~ 10765545 (-)
G113036 NA non-coding upstream 3231 10829243 ~ 10829584 (-)
G113037 NA non-coding upstream 4398 10830410 ~ 10830648 (-)
G113038 NA non-coding upstream 6451 10832463 ~ 10832687 (-)
G112983 NA non-coding upstream 11630 10837642 ~ 10839764 (-)
G113044 NA non-coding upstream 22733 10848745 ~ 10909663 (-)
G112965 NA other downstream 92855 10648265 ~ 10718658 (-)
G112928 NA other downstream 240705 10570442 ~ 10570808 (-)
G112567 NA other downstream 464578 10346471 ~ 10346935 (-)
G112491 LOC106584755 other downstream 514514 10184147 ~ 10296999 (-)
G113096 NA other upstream 195029 11021041 ~ 11021734 (-)
G113688 NA other upstream 384461 11210473 ~ 11218154 (-)
G113712 NA other upstream 484831 11310843 ~ 11312658 (-)
G113720 NA other upstream 497029 11323041 ~ 11325612 (-)
G113733 LOC106606124 other upstream 523330 11349342 ~ 11352741 (-)

Expression


Co-expression Network