LOC118937688


Basic Information

Item Value
gene id LOC118937688
gene name NA
gene type misc
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048566.1
NCBI id CM023220.2
chromosome length 103806877
location 11058263 ~ 11060049 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XR_005035048.1
ATAGGTCCTAGTTATAGTCACTACTATAGGTCCTAGATATAGTCACTACTATAGGTCCTAGTTATAGTCACTACTAAAGGTCCTAGTTATAGTCACTACTACAGGTCCTAGTTATAGTCACTACTACAGGTCCTAGTTATAGTCACTACTACAGGTCCTAGTTATAGTCACTACTATAGGTCCTAGATATAGTATAGGTCCTAGTTATAGTCACTACTATAGGTCCTAGTTATAGTCACTACTATAGGTCCTAGTTATAGTCACTACTATAGGTCCTAGTTATAGTCACTACTATAGGTCCTAGTTATAGTCACTACTATAGGTCCTAGTTATAGT
>TU129305
TTATACTATAGGTCCTAGTTATAGTCACTACTACAGGTCCTAGTTATAGTCACAACTATAGGTCCTAGTTATAGTCACTACTATAGGTCCTAGTTATAGTCACTACTATAGGTCCTAGTTATAGTCACTACTATAGGTCCTAGTTATAGTCACTACTATAGGTCCTAGTTATAGTCACTACTATAGGTCCTAGTTATAGTCACTACTATAGGTCCTAGTTATAGTCACTACTATAGGTCCTAGTTATTGTCACTACTATAGGTCCTAGTTATAGTATAGGTCCTAGTTATTGTCACTACTATAGGTCCTAGTTATAGTATAGGTCCTAGTTATTGTCACTACTACAGGTCCTAGTTATAGTCACTACTATAGGTCCTaac
>TU129306
CACTACTATAGGTCCTAGTTATAGTATAGGTCCAAGTTATACTATAGGTCCTAGTTATAGTCACTACTATAGGTCCTAGTTATAGTCACAACTATAGGTCCTAGTTATAGTCACTACTATAGGTCCTAGATATAGTAACTACTATAGGTCCTAGATATAGTATAGGTCCTAGTTATAGTCACTACTATAGGTCCTAGTTATAGTCACAACTATAGGTCCTAGTTATAGTCACTACTATAGGTCCTAGTTATAGTATAGGTCCTAGTTATTGTCACTACTATAGGTCCTAGTTATAGTATAGGTCCTAGTTATTGTCACTACTATAGGTCCTAGTTATAGTATAGGTCCTAGTTATTGTCACTACTACAGGTCCTAGTTATAGTCACAACTATAGGTCCTAGTTATAGTATAGGTCCTAGTTATAGTCACTACTATAGGTCCTAGTTATAGTATAGGTCCTAGTTATTGTCACTACTATAGGTCCTAGTTATAGTATAGGTCCTAGTTATTGTCACTACTATAGGTCCTAGTTATAGTATAGGTCCTAGTTATTGTCACTACTATAGGTCCTAGTTATAGTCACTACTATAGGTCCTAGTTATAGTCACTACTATAGGTCCTAGTTATTGTCACTACTATAGGTCCTAGTTATAGTATAGGTCCTAGTTATTGTCACTACTATAGGTCCTAGTTATAGTATAGGTCCTAGTTATTGTCACTACTACAGGTCCTAGTTATAGTCACTACTATAGGTCCTaac
>TU129307
TTATACTATAGGTCCTAGTTATAGTCACTACTACAGGTCCTAGTTATAGTATAGGTCCTAGTTATAGTCACTACTATAGGTCCTAGTTATAGTATAGGTCCTAGTTATAGTCACTACTATAGGTCCTAGTTATAGTATAGGTCCTAGTTATAGTCACTACTATAGGTCCTAGTTATAGTCACTACTATAGGTCCTAGTTATTGTCACTACTATAGGTCCTAGTTATAGTATAGGTCCTAGTTATTGTCACTACTATAGGTCCTAGTTATAGTATAGGTCCTAGTTATTGTCACTACTACAGGTCCTAGTTATAGTCACTACTATAGGTCCTaac

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XR_005035048.1 False 336 mRNA 0.37 3 11058984 11059473
TU129305 False 380 lncRNA 0.42 3 11058263 11059884
TU129306 False 760 lncRNA 0.48 5 11058263 11060049
TU129307 True 334 lncRNA 0.55 3 11058263 11059884

Neighbor

gene id symbol gene type direction distance location
LOC110511734 LOC105023503 coding downstream 57862 10840566 ~ 11001122 (-)
LOC118937685 NA coding downstream 177594 10879856 ~ 10881390 (-)
LOC110512108 rad21 coding downstream 232972 10811513 ~ 10826012 (-)
eif3h LOC100196680 coding downstream 250751 10736729 ~ 10808244 (-)
LOC118937678 NA coding downstream 296746 10759359 ~ 10762238 (-)
lratd2b LOC106573048 coding upstream 105640 11165113 ~ 11168638 (-)
prelid3a LOC106593866 coding upstream 188564 11196145 ~ 11261793 (-)
LOC110514530 LOC106572903 coding upstream 338619 11398092 ~ 11402862 (-)
LOC110513475 LOC106592216 coding upstream 412466 11471939 ~ 12290710 (-)
LOC118937712 NA coding upstream 524735 11584208 ~ 11585455 (-)
G113146 NA non-coding downstream 3401 11054602 ~ 11055583 (-)
G113104 NA non-coding downstream 27663 11031119 ~ 11031321 (-)
G113102 NA non-coding downstream 28971 11024601 ~ 11030013 (-)
G113101 NA non-coding downstream 34462 11024084 ~ 11024522 (-)
G113094 NA non-coding downstream 40160 11018362 ~ 11018824 (-)
G113153 NA non-coding upstream 2635 11062108 ~ 11063459 (-)
G113138 kiaa0196 non-coding upstream 4130 11063603 ~ 11082755 (-)
G113158 NA non-coding upstream 37491 11096964 ~ 11097169 (-)
G113167 NA non-coding upstream 47109 11106582 ~ 11106982 (-)
G113171 NA non-coding upstream 52049 11111522 ~ 11111843 (-)
G113096 NA other downstream 37250 11021041 ~ 11021734 (-)
G112965 NA other downstream 340326 10648265 ~ 10718658 (-)
G112928 NA other downstream 488176 10570442 ~ 10570808 (-)
G112567 NA other downstream 712049 10346471 ~ 10346935 (-)
G113688 NA other upstream 151000 11210473 ~ 11218154 (-)
G113712 NA other upstream 251370 11310843 ~ 11312658 (-)
G113720 NA other upstream 263568 11323041 ~ 11325612 (-)
G113733 LOC106606124 other upstream 289869 11349342 ~ 11352741 (-)

Expression


Co-expression Network