prelid3a (LOC106593866)


Basic Information

Item Value
gene id prelid3a
gene name LOC106593866
gene type misc
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048566.1
NCBI id CM023220.2
chromosome length 103806877
location 11196145 ~ 11261793 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_036937950.1
TAGTCGAATGCAGCAGTAGTGGAGACAGGGAATATGTAAccggtattttttttttttttaccgatCTCTCCGTTGTGATCTTGGTTGTACATCACAGGCTACCTGAGCATTTCCCCATCCTCGATCTGTGTGCGCTATGAACCGTgagaaggacagagaaaacGGAAAGATGAAGATCTGGAGTACAGAACATGTTTTCAGcTACCCGTGGGAGACGGTGATAAAGGCAGCGATGAGGAAGTACCCTAACCCCATGAACCCTAATGTTGTGGGAGTGGATGTGTTGGACAGGAACCTGGATACCGACGGACGGCTCCACAGCCACAGACTCCTCAGCACCGAGTGGGGCCTGCCAGGCATCGTACGAGCGATCTTGGGGACCGGTCATTCCCGGACGTACGTCAAGGAGCACTCCATCGTGGATCCCGaggagaaaaagatggagctttaTTCAACCAATATAACTCTAACCAATCTGGTGTCAGTGGATGAAAGACTGGTTTACAGACCTCATCCAGACAACTCAGAGGTTACTGTTCTGACCCAGGAGGCCATCATCACAGTAAAAGGAGTCAGTTTGAGCAGTTACCTGGAAGGAATGATGGCCCTCAGAATGTCAGCTAATGCCAGAAAGGGTTGGGATGCTCTACCTAAGATCTTCTctgtgtgttactgtctctatagGGTTGGGATGCTCTGCCTAAGATCTTCTctgtgtgttactgtctctatagGATTGGGATGCTCTATCTAAGATCTTCTctgtgtgttactgtctctatagGGTTGGGATGCTGTATTTAAGATCTTCTctgtgtgttactgtctctatagGGTTGGGATGCTCTATCTAAGATCTTCTctgtgtgttactgtctctatagGGTTGGGATGCTGTATCTAAGATCTTCTctgtgtgttactgtctctatagGGTTGGGATGCTATTGAGTGGATCATTCAGAACTCTGAAAGGGAGAACGTTCCTCTGTGTGAGCTGTACTGACTCTGGTAACTACTCTTCCCTGGCTGAGCTTAGCAGCACCTGACTGGTAACTACTCTTCCCTGGCTGAGCTTAGCAGCACCTGACTGGTAACTACTCTTCCCTGGCTGAGCTTAGCAGCACCTGACTGGTAACTACTCTTCCCTGGCCTAGCTTAGCAGCACCTGACTGGTAACTACTCTTCCCTGGCCTAGCTTAGCAGCACCTGACTGGTAACTACTCTTCCCTGGCCTAGCTTAGCAGCACCTGACTGGTAACTACTCTAATCTGGCTGAGCTTAGCAGCACCTGACTGGTAACTACTCTTCCCTGGTCGAGCTCAGCAGCACCTGACTGGTAACTACTCTTCCCTGGCTGAGCTTAGCAGCACCTGACTGGTAACTACTCTTCCCTGGCTGAGCTTAGCAGCACCTGACTGGTAACTACTCTTCCCTGGCTGAGCTTAGCAGCACCTGACTGGTAACTACTCTTCCCTGGCCTAGATTAGCAGCACCTGACTGGTAACTACTCTTCCCTGGCCTAGCTTAGCAGCACCTGACTGGTAACTACTCTTCCCTGGCTGAGCTTAGCAGCACCTGACTGGTAACTACTCTTCCCTGGCTGAGCTTAGCAGCACCTGACTGGTAACTACTCTTCCCTGGCTGAACTTAGCAGCACCTGACTGGTAACTACTCTTCCCTGGCTGAACTTAGCAGCACCTGCCTGGTAACTACTCTTCCCTGGCTGAGCTTAGCAGCACCTGACTGGTAACTACTCTTCCCTGGCTGAGCTTAACAGCACCTGACTGGTAACTACTCTTCTCTGGCCGAGCTTAACAGCACCTGACTGGTAACTACTCTTCCCTGGCCGAGCTTAGCAGCACCTGACTGGTAACTACTCTTCCCTGGCCGAGCTTAGCAGCACCTGACTGGTAACTACTCTTCCCTGGCCGAGCTTAGCAGCACCTGACTGGTAACTACTCTTCCCTGGCCGAGCTTAGCAGCACCTGACTGGTAACTACTCTTCCCTGGCCTAGCTTAGCAGCACCTGACTGGTAACTACTCTTCCCTGGCCTAGCTTAGCAGCAGCTGACTGGTAACTACTCTTCCCTGGCCTAGCTTAGCAGCACCTGACTGGTAACTACTCTTCCCTGGCCTAGCTTAGCAGCACCTGACTGGTAAC
>XM_036937954.1
TAGTCGAATGCAGCAGTAGTGGAGACAGGGAATATGTAAccggtattttttttttttttaccgatCTCTCCGTTGTGATCTTGGTTGTACATCACAGGCTACCTGAGCATTTCCCCATCCTCGATCTGTGTGCGCTATGAACCGTgagaaggacagagaaaacGGAAAGATGAAGATCTGGAGTACAGAACATGTTTTCAGcTACCCGTGGGAGACGGTGATAAAGGCAGCGATGAGGAAGTACCCTAACCCCATGAACCCTAATGTTGTGGGAGTGGATGTGTTGGACAGGAACCTGGATACCGACGGACGGCTCCACAGCCACAGACTCCTCAGCACCGAGTGGGGCCTGCCAGGCATCGTACGAGCGATCTTGGGGACCGGTCATTCCCGGACGTACGTCAAGGAGCACTCCATCGTGGATCCCGaggagaaaaagatggagctttaTTCAACCAATATAACTCTAACCAATCTGGTGTCAGTGGATGAAAGACTGGTTTACAGACCTCATCCAGACAACTCAGAGGTTACTGTTCTGACCCAGGAGGCCATCATCACAGTAAAAGGAGTCAGTTTGAGCAGTTACCTGGAAGGAATGATGGCCCTCAGAATGTCAGCTAATGCCAGAAAGGGTTGGGATGCTATTGAGTGGATCATTCAGAACTCTGAAAGGGAGAACGTTCCTCTGTGTGAGCTGTACTGACTCTGGTAACTACTCTTCCCTGGCTGAGCTTAGCAGCACCTGACTGGTAACTACTCTTCCCTGGCTGAGCTTAGCAGCACCTGACTGGTAACTACTCTTCCCTGGCTGAGCTTAGCAGCACCTGACTGGTAACTACTCTTCCCTGGCCTAGCTTAGCAGCACCTGACTGGTAACTACTCTTCCCTGGCCTAGCTTAGCAGCACCTGACTGGTAACTACTCTTCCCTGGCCTAGCTTAGCAGCACCTGACTGGTAACTACTCTAATCTGGCTGAGCTTAGCAGCACCTGACTGGTAACTACTCTTCCCTGGTCGAGCTCAGCAGCACCTGACTGGTAACTACTCTTCCCTGGCTGAGCTTAGCAGCACCTGACTGGTAACTACTCTTCCCTGGCTGAGCTTAGCAGCACCTGACTGGTAACTACTCTTCCCTGGCTGAGCTTAGCAGCACCTGACTGGTAACTACTCTTCCCTGGCCTAGATTAGCAGCACCTGACTGGTAACTACTCTTCCCTGGCCTAGCTTAGCAGCACCTGACTGGTAACTACTCTTCCCTGGCTGAGCTTAGCAGCACCTGACTGGTAACTACTCTTCCCTGGCTGAGCTTAGCAGCACCTGACTGGTAACTACTCTTCCCTGGCTGAACTTAGCAGCACCTGACTGGTAACTACTCTTCCCTGGCTGAACTTAGCAGCACCTGCCTGGTAACTACTCTTCCCTGGCTGAGCTTAGCAGCACCTGACTGGTAACTACTCTTCCCTGGCTGAGCTTAACAGCACCTGACTGGTAACTACTCTTCTCTGGCCGAGCTTAACAGCACCTGACTGGTAACTACTCTTCCCTGGCCGAGCTTAGCAGCACCTGACTGGTAACTACTCTTCCCTGGCCGAGCTTAGCAGCACCTGACTGGTAACTACTCTTCCCTGGCCGAGCTTAGCAGCACCTGACTGGTAACTACTCTTCCCTGGCCGAGCTTAGCAGCACCTGACTGGTAACTACTCTTCCCTGGCCTAGCTTAGCAGCACCTGACTGGTAACTACTCTTCCCTGGCCTAGCTTAGCAGCAGCTGACTGGTAACTACTCTTCCCTGGCCTAGCTTAGCAGCACCTGACTGGTAACTACTCTTCCCTGGCCTAGCTTAGCAGCACCTGACTGGTAAC
>TU130018
CGACAGATTGGGCTATATACGGTCCTTTTATTGTGACATTCAATACAAGGTCATGTAATCTAACAGATCCACAGTTTCGGCTACTAAAAACCCTAATATATATTTGTTATATCCGTGGTTATGTTCCTATAGAAGACTAGTTAACATAACGGCGGAACAGAGAAATCCGTTATAGAGGCAACATAATGACCGCAACCCTTGTCACTGCAGCTGGAAACGGTTCTCCGGTGCGACTCGTTGGACTGATGACGGACACTGTTTGATGGTGCGCATGCGTAGATCTGTAGTCGAATGCAGCAGTAGTGGAGACAGGGAATATGTAAccgctttttttttttttt

Function

NR:

description
PREDICTED: protein slowmo homolog 1

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_036937950.1 False 2164 mRNA 0.51 7 11248037 11261509
XM_036937954.1 False 1864 mRNA 0.52 7 11248037 11261509
TU130018 True 341 lncRNA 0.42 2 11196145 11261793

Neighbor

gene id symbol gene type direction distance location
lratd2b LOC106573048 coding downstream 79399 11165113 ~ 11168638 (-)
LOC118937688 NA coding downstream 188564 11058263 ~ 11060049 (-)
LOC110511734 LOC105023503 coding downstream 246915 10840566 ~ 11001122 (-)
LOC118937685 NA coding downstream 366647 10879856 ~ 10881390 (-)
LOC110512108 rad21 coding downstream 422025 10811513 ~ 10826012 (-)
LOC110514530 LOC106572903 coding upstream 136583 11398092 ~ 11402862 (-)
LOC110513475 LOC106592216 coding upstream 210430 11471939 ~ 12290710 (-)
LOC118937712 NA coding upstream 322699 11584208 ~ 11585455 (-)
LOC118937710 NA coding upstream 324050 11585559 ~ 11586577 (-)
LOC118937716 NA coding upstream 697770 11959279 ~ 11960863 (-)
G113693 NA non-coding downstream 12868 11234735 ~ 11235169 (-)
G113680 NA non-coding downstream 34167 11189088 ~ 11213870 (-)
G113675 NA non-coding downstream 69308 11174887 ~ 11178729 (-)
G113673 NA non-coding downstream 75681 11172152 ~ 11172356 (-)
G113672 NA non-coding downstream 77317 11170141 ~ 11170720 (-)
G113698 LOC106606161 non-coding upstream 7946 11269455 ~ 11278174 (-)
G113701 NA non-coding upstream 17796 11279305 ~ 11286148 (-)
G113716 NA non-coding upstream 56356 11317865 ~ 11318567 (-)
G113721 NA non-coding upstream 64221 11325730 ~ 11326367 (-)
G113725 NA non-coding upstream 74461 11335970 ~ 11337267 (-)
G113688 NA other downstream 29883 11210473 ~ 11218154 (-)
G113096 NA other downstream 226303 11021041 ~ 11021734 (-)
eif3h LOC100196680 other downstream 439793 10736729 ~ 10808244 (-)
G112965 NA other downstream 529379 10648265 ~ 10718658 (-)
G112928 NA other downstream 677229 10570442 ~ 10570808 (-)
G113712 NA other upstream 49334 11310843 ~ 11312658 (-)
G113720 NA other upstream 61532 11323041 ~ 11325612 (-)
G113733 LOC106606124 other upstream 87833 11349342 ~ 11352741 (-)
G114390 NA other upstream 1322518 12584027 ~ 12585140 (-)
G113671 NA non-coding downstream 26996 11168947 ~ 11169149 (-)
G113669 NA non-coding downstream 38395 11157517 ~ 11157750 (-)
G112567 NA other downstream 849210 10346471 ~ 10346935 (-)

Expression


Co-expression Network