RNA id: TU130068


Basic Information

Item Value
RNA id TU130068
length 3044
RNA type TUCP
GC content 0.44
exon number 3
gene id G113688
representative True

Chromosome Information

Item Value
chromosome id NC_048566.1
NCBI id CM023220.2
chromosome length 103806877
location 11210473 ~ 11218154 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

GCGATTTGCATAGATCTGTCGGTAAACCATTGGTACAGTGTCACCACACACAGTTAGAAGAAACACGTAAAACAGACTGAGCCCTCTCCCTCTTCAAATATAACTATGCCGGCACTCTTACAATGTGCATATGGTATTGTTAAATCGTATGTCCGTTCACTTGGTTATAAACTCTCACTGAAATATGACTAGTTGCATCCACGTCGCCTCAGGGGAACGGTATTTATAGATATACACTGAgcggacaaaacattaggaacacctgctctttccgtgacatagactgaccaggtgaatccagatgaaagatatgatcccttattgatgtcacttattataTCCACAtgaaatcagtgtagatgaaggggaaaagacagggtaaagaaagatttaagccttgagacaattgagacaaggattgtgtatgtgtgccatccaGAGGGTAAACGGGCAAGACAGAAGATTTAAGAgcgaggtatggtagtagatgccagacgcaccagtttgtgtcaagaactgcaaagctgctggggttttcacgctcaacagtttcctgtgtgtatcaagaatggtccaccacccaaaggacatccagccaacttgacacaactgtgggaagcattggagtcaacttgggccagcatccctgtggaacgctttcaacaccttgtagagtccatgttctGACGaaattcttaatgttttgtacactcagtatacagtgttcctaatgttttgtacactcagtatacagtgttcctaatgttttgtacactcagtatacagtgttcctaatgttttgtacactcagtatacagtgttcctaatgttttgtactctcagtatacagtgttcctaatgttttgtacactcagtatacagtgttcctaatgttttgtactctcagtatacagtgttcctaatgttttgtacactcagtataaagtgttcctaatgttttgtacactcagtatacagtgttcctaatgttttgtactctcagtatacagtgttcctaatgttttgtactctcagtataaagtgttcctaatgttttgtacactcagtatacagtgttcctaatgttttgtactctcagtatacagtgttcctaatgttttgtactctcagtagaaagtgttcctaatgttttgcaaaCTCAGTataaagtgttcctaatgttttgtacgctcagtATAAAGTGTTCTCAAACAACAGTCACTGAATCATGTTGGCACACTACCCTGGGTTTGTGATGATGCTCAGTATAACACAGGGAACGTCCTTGCTGTCTCATTCATCTcagaacccagaaccaaatcTTGCGTGCGCTGGCTAGCTACAGTCTGTTACCAGAGACGACTGTCTCACATCATGTTTGGCCTACCGTAGGGTTTGTTATTGTGCAGTGATGAGTAGTGACTGGAGTTTTTCCTCGAAGATGTGCCCAGAGAAAACTCTGGACCCAACCCACTGGGGACAGACATCAGTTcaaacgtctagttttgatttggTTTCAGATGttaactaacgtgaattcaacgtgaattCAACAAGACATTTCACCATATCGTTGGATTTATGCTAAAAAGTTGTGTAAAAATAGAaccagttttccacgttgattcaacgttaTCAAGATTGAATTTCTTTTGGGGTTGAAATGACGTAGAAACAACAACTGTtgcaaccagtttttgcccagtggggagTAATGTCATCCAGTCTGTTGGGAACGTGTGTTTGGACTGGTGACTAAACAGTTGGTCATCATGTAGTGTAGTCTTCATATAGTCTACAGGACTGTATACACCTATAGCCTTCAGTTCCACACAACAATTAACTGCCCAGGGCTTCAGTTCCACACAACAATTAACTGCCCAGGGCTTCAGTTCCACACAACAATTAACTGCCCGGGGCTTCAGTTCCACACAACAATTAACTGCCCAGGGCTTCAGTTCCACACAACAATGAACTGCCCAGGGCTTCAGTTCCACACAGCAATTAACTGCCCAGGGCTTCAGTTCCACACAACAATTAACTGCCCAGGGCTTCAGTTCCACACAACAATGAACTGCCCAGGGCTTCAGTTCCACACAACAATTAACTGCCCAGGGCTTCAGTTCCACACAACAATTAACTGCCCAGGGCTTCAGTTCCACACAACAATGAACTGCCCAGGGCTTCAGTTCCACACAGCAATTAACTGCCCAGGGCTTCAGTTCCACACAACAATTAACTGCCCAGGGCTTCAGTTCCACACAACAATTAACTGCCCAGGGCTTCAGTTCCACACGACAAGTAAAATCTCTAAAAACATCTCATTCGATTTAAGATTCGCTGCTGGAAAAAGTGTCACCCATTGAGGGAAtgtgtgGGACAGGAAATGACATCAGAGATGTTCTTTGCAACATCTGTGTTGGTCAGAGTCACATCTGAGCAGCAACATATGTATAGACAGTATTGCCCTACCATGCAAGAAGGCAATAACTGCTCATTTGGTCCAAAATGAGTTCATGTCAATTTTTTTGCTTCATTAAATACATtcttaatcatgtggacaagtatcctgcctcgGTTGTATAGTGTTCAGGAGAAAATGGGGGGTCATGTTAGCCAGTAACTGCATGAAGATACTGTGACACCAAGGTAGATAAAAGGTatttttctcagttccacgcTATGAGCAGTTAATGTCTTTTTGCTTGGTCGGGCAGAGTATCATCTGAAGGGgacacacacatccacaacacACACTCAGGGAGGCTTGGATTTGTTGGAGACACACACCAGGGACAGAGAACCGTGGTCAAACAGCCTGTACGGCAACGTCCCCTTCGTCGTCCACGCGTCAGTCTTCGGGTCGTAGCACTCGAAGCTGTCGGAGTCCTCTATGACGTCGTGTCCGTTGATGAAGCGTCCTCCGGTCACGTACAGTTTGTCGTCGAGCACCGCCACGGCGTGATGCATCCTCCTCTGCTTCAGGTTCTCACACTTCGTAAAGCGGTTGGCTTTGGTGTCGTACGCGATCATTCTTCTGGTGT

Function

GO: NA

KEGG:

id description

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU130046 lncRNA downstream 31744 11174887 ~ 11178729 (-) True G113675
TU130044 lncRNA downstream 38117 11172152 ~ 11172356 (-) True G113673
TU130043 lncRNA downstream 39753 11170141 ~ 11170720 (-) True G113672
TU130042 lncRNA downstream 41324 11168947 ~ 11169149 (-) True G113671
TU130038 lncRNA downstream 52723 11157517 ~ 11157750 (-) True G113669
TU130074 lncRNA upstream 16581 11234735 ~ 11235169 (-) True G113693
TU130088 lncRNA upstream 51301 11269455 ~ 11278174 (-) False G113698
TU130089 lncRNA upstream 54609 11272763 ~ 11276574 (-) True G113698
TU130092 lncRNA upstream 61151 11279305 ~ 11286148 (-) True G113701
TU130108 lncRNA upstream 99711 11317865 ~ 11318567 (-) True G113716
XM_021586929.2 mRNA downstream 41835 11165113 ~ 11168638 (-) True lratd2b
XR_005035048.1 mRNA downstream 151000 11058984 ~ 11059473 (-) False LOC118937688
XM_036937860.1 mRNA downstream 209351 10840566 ~ 11001122 (-) False LOC110511734
XM_036937865.1 mRNA downstream 209351 10840566 ~ 11001122 (-) False LOC110511734
XR_005035034.1 mRNA downstream 209351 10840566 ~ 11001122 (-) True LOC110511734
XM_036937950.1 mRNA upstream 29883 11248037 ~ 11261509 (-) False prelid3a
XM_036937954.1 mRNA upstream 29883 11248037 ~ 11261509 (-) False prelid3a
XM_036938010.1 mRNA upstream 179938 11398092 ~ 11402862 (-) True LOC110514530
XM_036938038.1 mRNA upstream 253785 11471939 ~ 12290703 (-) False LOC110513475
XM_036938043.1 mRNA upstream 253785 11471939 ~ 12290706 (-) False LOC110513475
TU129220 other downstream 188739 11021041 ~ 11021734 (-) True G113096
TU129027 other downstream 402229 10736729 ~ 10808244 (-) True eif3h
TU129012 other downstream 491815 10648265 ~ 10718658 (-) True G112965
TU128973 other downstream 639665 10570442 ~ 10570808 (-) True G112928
TU128520 other downstream 863538 10346471 ~ 10346935 (-) True G112567
TU130103 other upstream 92689 11310843 ~ 11312658 (-) True G113712
TU130124 other upstream 104887 11323041 ~ 11325612 (-) True G113720
TU130157 other upstream 131188 11349342 ~ 11352741 (-) False G113733
TU130159 other upstream 131188 11349342 ~ 11352741 (-) True G113733
TU130213 other upstream 408381 11626535 ~ 11658668 (-) True LOC110513475

Expression Profile