RNA id: TU134681


Basic Information

Item Value
RNA id TU134681
length 1413
lncRNA type inter_gene
GC content 0.42
exon number 1
gene id G117072
representative True

Chromosome Information

Item Value
chromosome id NC_048566.1
NCBI id CM023220.2
chromosome length 103806877
location 16300752 ~ 16302164 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

atcgcgctctagcaactccatgtggtgggccgggtgcctgcaagctgacaaCGATCGCCAGTTGGACCGTGTTTCCTcagacacgttggtgcggctggcttctgggttaacgagcagtgtgtcaagaagcagtgtggcttgactTTCGCCACTCCCGTGTCCGTAGTGGAGTCGCAGCGATGGGTCAAGACTAACTATCAATTGGATATCAAAAAAGGGGTCAAATAAAAAACAAAGGGCTCTATTTTATCAGATCCTTTTTAGCCGACATCTGCATAGCGCTTGTTTTGGCCGTGTCGGCGGTGGAACTGcattagggtggcaggtagcctagcagttaaagCATTGGAACAGTCACTGAAAGGTtgttggttcaaatccctgagccgacagaAATCTGTCAGTGCCCTTGAGTAAAGCGCTTTAaccttaattgctcctgtaagttgctctggataagagcatcagcTAAATGACTAAAGTGTAAATCCACAAGCAGCTCCTGGAATTATAGCATTAATAGAAATCCCATGCAGATTTGTTGGAACACAGTGTGAGATATAGATTAATCTACACCTTGATTAGGATGGTAGAAAACCTCATTATTCCATTTAATGATTTTTCAATTTGAGCATGATTATTTCTGTATAGCTTACACTTTCTGTTTCAGAACTTCTAACGTGGGTGGgggtgtggcttcgtgacaatgatcGCAAGAGCAGCTGTTCACTGTTTTAACTGGTCCAACCCAGCTCCACCTCCAACAtgccaaaacatcagctatgcaGGTGTCTGCTATCGCTTGATGTGATTTCATCCATATGGGCCTTAATGTATAGTATATGGTGCAATCTAAAACGGCATATAATTAAAAAGTCCTACAGCTACTGCAAAGTAGTCTAATCTACATTCAAATTCCACGACAAAGACAtacccacagagatcctattaaattacaaGAAACCCTCAATATTCACATATAATTAGGCCTACAGTTTATACACATCTTCCAAAATATATGCAAACAGACAAATGTCTCAATGtttgttttcttggaaagctgAGTGTTAGAATATGATGCATTATCCATATTGCTGCATTTACAACTTGCCTAAGTCCTAGCATCAACGGATTTCAGCCAGTGGATGGCTGTGGATTGATTGCATTTGTTTGTATGGAATGTTAATAATTGATGTAACTTTTATAGCGCTTTTCTTTTCAGAAAATGTCAAAGTGCATAAAAAGCAAACAACCAATATAAATTTagatggtagagatggagatTGAATATTCCTTTGGCTTCGGATGAAAGGCTGGAATTTAAGGCAGTTTGGATTGAAAGGCGTTGCTTCAGGAGAAAGGCTGGGAGATGAGGCAGTTTGGATTGAAAGGCGGCAGTGTTGCTTCAGGAGA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU134719 lncRNA upstream 10778 16289718 ~ 16289974 (+) True G117105
TU134645 lncRNA upstream 35827 16190034 ~ 16264925 (+) False G117053
TU134672 lncRNA upstream 48106 16249438 ~ 16252646 (+) True G117067
TU134701 lncRNA upstream 64035 16235952 ~ 16236717 (+) True G117088
TU134695 lncRNA upstream 71703 16227681 ~ 16229049 (+) True G117083
TU134732 lncRNA downstream 19678 16321842 ~ 16322418 (+) True G117117
TU134740 lncRNA downstream 34491 16336655 ~ 16337975 (+) True G117125
TU134746 lncRNA downstream 51917 16354081 ~ 16359309 (+) True G117131
TU134750 lncRNA downstream 58701 16360865 ~ 16390622 (+) False G117133
TU134749 lncRNA downstream 59335 16361499 ~ 16390622 (+) False G117133
XM_021621796.2 mRNA upstream 2203 16290145 ~ 16298549 (+) True LOC110536177
XM_021621651.2 mRNA upstream 127714 16133770 ~ 16173038 (+) True chrnb2
XM_036939430.1 mRNA upstream 183193 16108811 ~ 16117559 (+) True LOC110536089
XM_036939344.1 mRNA upstream 264763 16023748 ~ 16035989 (+) False LOC110536080
XM_036939353.1 mRNA upstream 264763 16023749 ~ 16035989 (+) False LOC110536080
XM_036939628.1 mRNA downstream 213917 16516081 ~ 16667428 (+) True LOC110512627
XM_036961677.1 mRNA downstream 431169 16733333 ~ 16747286 (+) True LOC118936591
XM_036939646.1 mRNA downstream 457572 16759736 ~ 16767223 (+) False LOC110520867
XM_036939656.1 mRNA downstream 569378 16871542 ~ 16875899 (+) False LOC110536210
XM_036939657.1 mRNA downstream 569378 16871542 ~ 16875899 (+) False LOC110536210
TU134636 other upstream 114968 16183686 ~ 16185784 (+) True G117048
TU133662 other upstream 849064 15450468 ~ 15451688 (+) True LOC110535842
TU133604 other upstream 933963 15355858 ~ 15366789 (+) True LOC110535783
TU133587 other upstream 963050 15337430 ~ 15337702 (+) True G116224
TU133558 other upstream 964394 15329582 ~ 15336358 (+) True LOC110535811
TU135335 other downstream 693546 16995710 ~ 16998361 (+) True LOC110536275
TU135454 other downstream 747968 17050132 ~ 17050839 (+) True G117704
TU135467 other downstream 771037 17073201 ~ 17073701 (+) True G117714
TU135631 other downstream 1097849 17400013 ~ 17409287 (+) False LOC110520798
TU135611 other downstream 1108468 17410632 ~ 17421660 (+) False LOC110520798

Expression Profile