RNA id: TU134740


Basic Information

Item Value
RNA id TU134740
length 236
lncRNA type intronic
GC content 0.45
exon number 2
gene id G117125
representative True

Chromosome Information

Item Value
chromosome id NC_048566.1
NCBI id CM023220.2
chromosome length 103806877
location 16336655 ~ 16337975 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

gtctcagcggagggagagagcagcagaccgagggtcagtctcagcagaaggagagagcagcagactgagggtcagtctcagcagagggagagagcagcagaatgatggtcagtctcagcagagggagagagcagcagactgagggtcagtctcagcagagggagagagcagcagactgagggtcagtctcagcagaggcagagagcagcagactgagggtcagtctcagcagaggg

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU134732 lncRNA upstream 14237 16321842 ~ 16322418 (+) True G117117
TU134681 lncRNA upstream 34491 16300752 ~ 16302164 (+) True G117072
TU134719 lncRNA upstream 46681 16289718 ~ 16289974 (+) True G117105
TU134672 lncRNA upstream 84009 16249438 ~ 16252646 (+) True G117067
TU134701 lncRNA upstream 99938 16235952 ~ 16236717 (+) True G117088
TU134746 lncRNA downstream 16106 16354081 ~ 16359309 (+) True G117131
TU134750 lncRNA downstream 22890 16360865 ~ 16390622 (+) False G117133
TU134749 lncRNA downstream 23524 16361499 ~ 16390622 (+) False G117133
TU134748 lncRNA downstream 32489 16370464 ~ 16390622 (+) True G117133
TU134763 lncRNA downstream 73442 16411417 ~ 16417280 (+) False G117145
XM_021621796.2 mRNA upstream 38106 16290145 ~ 16298549 (+) True LOC110536177
XM_021621651.2 mRNA upstream 163617 16133770 ~ 16173038 (+) True chrnb2
XM_036939430.1 mRNA upstream 219096 16108811 ~ 16117559 (+) True LOC110536089
XM_036939344.1 mRNA upstream 300666 16023748 ~ 16035989 (+) False LOC110536080
XM_036939628.1 mRNA downstream 178106 16516081 ~ 16667428 (+) True LOC110512627
XM_036961677.1 mRNA downstream 395358 16733333 ~ 16747286 (+) True LOC118936591
XM_036939646.1 mRNA downstream 421761 16759736 ~ 16767223 (+) False LOC110520867
XM_036939656.1 mRNA downstream 533567 16871542 ~ 16875899 (+) False LOC110536210
XM_036939657.1 mRNA downstream 533567 16871542 ~ 16875899 (+) False LOC110536210
TU134636 other upstream 150871 16183686 ~ 16185784 (+) True G117048
TU133662 other upstream 884967 15450468 ~ 15451688 (+) True LOC110535842
TU133604 other upstream 969866 15355858 ~ 15366789 (+) True LOC110535783
TU133587 other upstream 998953 15337430 ~ 15337702 (+) True G116224
TU133558 other upstream 1000297 15329582 ~ 15336358 (+) True LOC110535811
TU135335 other downstream 657735 16995710 ~ 16998361 (+) True LOC110536275
TU135454 other downstream 712157 17050132 ~ 17050839 (+) True G117704
TU135467 other downstream 735226 17073201 ~ 17073701 (+) True G117714
TU135631 other downstream 1062038 17400013 ~ 17409287 (+) False LOC110520798
TU135611 other downstream 1072657 17410632 ~ 17421660 (+) False LOC110520798

Expression Profile