RNA id: TU148903


Basic Information

Item Value
RNA id TU148903
length 1891
lncRNA type antisense_over
GC content 0.46
exon number 1
gene id G129146
representative True

Chromosome Information

Item Value
chromosome id NC_048566.1
NCBI id CM023220.2
chromosome length 103806877
location 29480966 ~ 29482856 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

ACCCCAACTGTCACTTTCTACATTGACCTATTCCATCGGAGAAGCTAAGGTGGGTCTAGAATGGGCTCATTCCAGCTATCACAGAAGCAACAACAGGAATGCTGGACAGTACACCAGAGAAGACATCTGACATCAGAGGGCAGAAGAGAGCTGCCAGTCACAGCGAAGGAGAACTCAACTCGCCCAAATGCTACCTCAGTAGCCCCTCCAGAGGAATACTGCAGTTGTTACTGGACATTTCAAAGTACACAAAACCCCAGTTAGGGTTGCTCATCAAAAATACACACTCAGGATATTATACAGACCATTTTCGGGTCTTGGAAAAAAACGATACAATTTAATAAAACTCACAAAGGGAAATATATTAGAATCTGTAGGTATAAATATGTTTTATCCCTGTCAGACATCACATTATTACATGGAAGGCAATTTGAGATATTTTCCATCCTTTGGAAATCAATATAGTATTGTAATTTACTCCTTACTCTATTGCTTTAGAAAGATGGTATGAGTAACTTTGGGAAGATGTCTTTTTTACTTTGGCAACTACAGTAGGTAAAAATATGAACAGGATGAACAATACATTGTAAACATTGTCTTACAAATACTGACATATGAACCAAACGTACATTCAAAAACAGTCCCTTCTGAAATGAATCGAGACGTTATTACAACTCACTGCATACCAAATGTAGACACACAAAGATGACGTAATAAATTAGTGATAAATTAGTTTCTATACAAAGGATGAAACCACTGTAGTATTATATTTACTATAAACAAAACACTAAATTCCCCTCCATGATAAAATAAATGGAAAATAACAGAAAGTGATACAAAAAATTTGTTGAAGATGCCATTTACTGTCTGGATTTGTGGAATTATGCAACAGGCCATCCTCTGTGCTGAGATGGATAATACAtattgttttaatacatttgtctCAGCGTAGTTAAGGGATTAGAATCAACACAACTAGTGTCAGGCTTCAAAAGTTGACTTCTATCCTCACTGAGAGCAAACACCTGTATTTATTCCTGTCAACATTGGCTTCTCCTGCTGGTAGAAAATGAATCAGGGAAACATTGACCTCTGTAACCAGTCACAATCCCATGTTCCAGCCAGTCAAAGGTGATGCCTGTTGTTTATGAAACAAGGCCATCAAGTATGAAGAAAGAGCATCTGCTCGGTCAGAGTCAGTGTGGCTAATGCTATACCCACAGCTCCTACCAGTCACTAGTTCATAAACACGTCCCCGTCCACAGAGCCACCAGACGCTCTGATAGGACAGCCACACCCAGGATCAGAGGCAAACATGGACTACTCCTATCGGCCTTGCCCACCAGTAGCAGATGCACCTTATTGGGGTCTGATATCATTCCCCGGGCGTCTTCCAGGGCCACTACGGCCGCCGTGCTGGAGTTGAGGTCCCCTGTGGCCAGCAGGTCAAACAGGCAGGCCTGGTAGTAGATGTCCCTGGCAGGGAGGAGGGCTGCACAGTGGGCATGGGCTGCAGCAGAGAGCtggctggaggaagaggaggaagagagggaagaggaagaagaggggctGGGTAGCGTCTCTAGGCGCTGTGAAGGTGGGCAGCcatacacacacagctgcagGTCCTGCTCGGGGGTGAATGCTTCAGCAATGGCGCGTGGCGAGCGTACTGACAGTCCCAGGGACCGCCCACTCTGACGCACCACCAGGGTGGTGCCGATGTGGGCGGCACGGATCTCAGCCTGGTGCCCAGGCAGATCAGAGTGGACGCTCAGGCTGTACTGGCCCTGCCTCTCCCCGCTGGTCACTGAGCCGTCCACGAAGGCTGCAGGAACATTGTCCAGCTCCGCCTGGTAGATCTGCTGCTCGATACACTGGCGCCAGTTTT

Function

GO: NA

KEGG:

id description

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU148901 lncRNA upstream 330 29478712 ~ 29480636 (+) True G129145
TU148911 lncRNA upstream 4608 29476081 ~ 29476358 (+) True G129154
TU148910 lncRNA upstream 4976 29475772 ~ 29475990 (+) True G129153
TU148908 lncRNA upstream 6446 29474253 ~ 29474520 (+) True G129151
TU148906 lncRNA upstream 7476 29473282 ~ 29473490 (+) True G129149
TU148913 lncRNA downstream 2910 29485766 ~ 29486092 (+) True G129156
TU148914 lncRNA downstream 3416 29486272 ~ 29486741 (+) True G129157
TU148917 lncRNA downstream 6097 29488953 ~ 29489241 (+) True G129160
TU148923 lncRNA downstream 12948 29495804 ~ 29497706 (+) True G129165
TU148934 lncRNA downstream 28980 29511836 ~ 29512133 (+) True G129176
XM_036944640.1 mRNA upstream 2565 29424822 ~ 29478401 (+) False LOC110534631
XM_021557438.2 mRNA upstream 62669 29369835 ~ 29418297 (+) False LOC110486083
XM_036944567.1 mRNA upstream 62669 29369835 ~ 29418297 (+) True LOC110486083
XR_005034523.1 mRNA upstream 248245 29231578 ~ 29232721 (+) True LOC118937130
XM_021557416.2 mRNA upstream 284326 29172111 ~ 29196640 (+) True LOC100136336
XM_021557640.2 mRNA downstream 62388 29545244 ~ 29553946 (+) False LOC110486208
XR_005039452.1 mRNA downstream 111308 29594164 ~ 29594216 (+) True LOC118944146
LOC118936731 mRNA downstream 172019 29654875 ~ 29662028 (+) True LOC118936731
XM_021557732.2 mRNA downstream 196351 29679207 ~ 29685150 (+) True LOC110486269
XM_021557752.2 mRNA downstream 202999 29685855 ~ 29697686 (+) False LOC110486279
TU148818 other upstream 2836 29477617 ~ 29478130 (+) True LOC110534631
TU148590 other upstream 499678 28939899 ~ 28981288 (+) True G128853
TU148570 other upstream 536576 28932056 ~ 28944390 (+) True LOC110485990
TU148197 other upstream 933051 28250842 ~ 28547915 (+) True G128490
TU148132 other upstream 1391521 28088647 ~ 28089445 (+) True G128436
TU148912 other downstream 1777 29484633 ~ 29485130 (+) True G129155
TU150186 other downstream 117170 29600026 ~ 29641096 (+) True G130308
TU150246 other downstream 203111 29685967 ~ 29693851 (+) True LOC110486279
TU150298 other downstream 306720 29789576 ~ 29789831 (+) True G130414
TU151478 other downstream 1217326 30700182 ~ 30700623 (+) True G131491

Expression Profile