RNA id: TU168915


Basic Information

Item Value
RNA id TU168915
length 254
lncRNA type inter_gene
GC content 0.49
exon number 1
gene id G147267
representative True

Chromosome Information

Item Value
chromosome id NC_048566.1
NCBI id CM023220.2
chromosome length 103806877
location 44482458 ~ 44482711 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

GATCACCAATGCCAGTTAGGATATTTGATATACCATATTAAAGTTTGAACAGGTCAGACTAAACCTACCTACCTCTTCATTGACGACCGTTGGGTAAGCAGGCAAGAAGTGAGGCTGGAGGTAAGTTCTTTGCCAGCACCCCATTGATGGGCATGGCAGCGTAGATGAGCTCCTGGCCCCTCCTGAGCACTGATTacattatcaatggtggttataaTTAGCATGGTGGAAACAACCTGATCGCTACATTCAcc

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU168914 lncRNA downstream 1504 44480597 ~ 44480954 (-) True G147266
TU168870 lncRNA downstream 15020 44466235 ~ 44467438 (-) True G147224
TU168735 lncRNA downstream 265974 44215687 ~ 44216484 (-) True G147091
TU168724 lncRNA downstream 278956 44198593 ~ 44203502 (-) True G147080
TU168725 lncRNA downstream 280758 44198895 ~ 44201700 (-) True G147081
TU168942 lncRNA upstream 35251 44517962 ~ 44518789 (-) True G147291
TU168980 lncRNA upstream 89354 44572065 ~ 44604782 (-) True LOC110490449
TU169031 lncRNA upstream 126862 44609573 ~ 44612643 (-) False G147352
TU169032 lncRNA upstream 126862 44609573 ~ 44615525 (-) False G147352
TU169030 lncRNA upstream 128499 44611210 ~ 44623234 (-) False G147352
XM_036949419.1 mRNA downstream 18009 44436377 ~ 44464449 (-) False LOC110490352
XM_036949560.1 mRNA upstream 90731 44573442 ~ 44606816 (-) False LOC110490449
XR_005036902.1 mRNA upstream 91294 44574005 ~ 44606817 (-) False LOC110490449
XR_005036903.1 mRNA upstream 91294 44574005 ~ 44606817 (-) False LOC110490449
XR_005036904.1 mRNA upstream 91294 44574005 ~ 44606817 (-) False LOC110490449
XR_005036907.1 mRNA upstream 91294 44574005 ~ 44606817 (-) False LOC110490449
TU168885 other downstream 46341 44434790 ~ 44436117 (-) True LOC110490352
TU168015 other downstream 698739 43776063 ~ 43783719 (-) True LOC110490298
TU167341 other downstream 1090329 43372840 ~ 43392129 (-) True LOC110490183
TU167289 other downstream 1209942 43270717 ~ 43272516 (-) True G145767
TU166468 other downstream 1775179 42706818 ~ 42707279 (-) True G145010
TU168978 other upstream 89237 44571948 ~ 44578755 (-) False LOC110490449
TU168984 other upstream 89237 44571948 ~ 44578755 (-) False LOC110490449
TU168994 other upstream 89237 44571948 ~ 44578755 (-) False LOC110490449
TU168976 other upstream 89354 44572065 ~ 44578755 (-) False LOC110490449
TU169520 other upstream 380374 44863085 ~ 44863559 (-) True G147800

Expression Profile