RNA id: TU168725


Basic Information

Item Value
RNA id TU168725
length 238
lncRNA type sense_over
GC content 0.46
exon number 2
gene id G147081
representative True

Chromosome Information

Item Value
chromosome id NC_048566.1
NCBI id CM023220.2
chromosome length 103806877
location 44198895 ~ 44201700 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

tttaaccatcttccctgtccctgctgaagaaaagcaggcccaaaccatgatgctgccaccaccatgtttgacagtgggtatggtgtgttcagggtgaagagctgtgttgcttttacgccaaacataacgttttgcattgttgccaaaaagttcaattttggtttcatctgaccagagcaccttcttccacatgtttggtgtgtctcccaggtggcttgtggcaaactttaaacaacac

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU168598 lncRNA downstream 61615 44043733 ~ 44137280 (-) True G146959
TU168154 lncRNA downstream 189088 44009601 ~ 44009807 (-) True G146534
TU168148 lncRNA downstream 195174 44003308 ~ 44003721 (-) True G146528
TU168144 lncRNA downstream 199328 43999267 ~ 43999567 (-) True G146524
TU168135 lncRNA downstream 209559 43989043 ~ 43989336 (-) True G146515
TU168735 lncRNA upstream 13987 44215687 ~ 44216484 (-) True G147091
TU168870 lncRNA upstream 264535 44466235 ~ 44467438 (-) True G147224
TU168914 lncRNA upstream 278897 44480597 ~ 44480954 (-) True G147266
TU168915 lncRNA upstream 280758 44482458 ~ 44482711 (-) True G147267
TU168942 lncRNA upstream 316262 44517962 ~ 44518789 (-) True G147291
XM_036949374.1 mRNA downstream 270614 43924190 ~ 43928281 (-) True LOC118940359
XM_036949367.1 mRNA downstream 275158 43922960 ~ 43923737 (-) True LOC118940358
XM_021563622.2 mRNA downstream 321093 43809668 ~ 43877802 (-) True LOC110490306
XM_021563612.2 mRNA downstream 415011 43776526 ~ 43783884 (-) False LOC110490298
XM_036949350.1 mRNA downstream 438545 43698959 ~ 43760350 (-) True LOC110490292
XR_005036881.1 mRNA upstream 234224 44435924 ~ 44464449 (-) False LOC110490352
XM_021563746.2 mRNA upstream 234677 44436377 ~ 44464449 (-) False LOC110490352
XM_036949412.1 mRNA upstream 234677 44436377 ~ 44464449 (-) False LOC110490352
XM_036949419.1 mRNA upstream 234677 44436377 ~ 44464449 (-) False LOC110490352
XR_005036880.1 mRNA upstream 234677 44436377 ~ 44464449 (-) False LOC110490352
TU168015 other downstream 415176 43776063 ~ 43783719 (-) True LOC110490298
TU167341 other downstream 806766 43372840 ~ 43392129 (-) True LOC110490183
TU167289 other downstream 926379 43270717 ~ 43272516 (-) True G145767
TU166468 other downstream 1491616 42706818 ~ 42707279 (-) True G145010
TU165059 other downstream 2468473 41714546 ~ 41730422 (-) True LOC110489860
TU168885 other upstream 233090 44434790 ~ 44436117 (-) True LOC110490352
TU168978 other upstream 370248 44571948 ~ 44578755 (-) False LOC110490449
TU168984 other upstream 370248 44571948 ~ 44578755 (-) False LOC110490449
TU168994 other upstream 370248 44571948 ~ 44578755 (-) False LOC110490449
TU168976 other upstream 370365 44572065 ~ 44578755 (-) False LOC110490449

Expression Profile