RNA id: XR_005036880.1


Basic Information

Item Value
RNA id XR_005036880.1
length 4062
RNA type mRNA
GC content 0.49
exon number 19
gene id LOC110490352
representative False

Chromosome Information

Item Value
chromosome id NC_048566.1
NCBI id CM023220.2
chromosome length 103806877
location 44434790 ~ 44464449 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

TAGCTTCCTGTCTCGATCGCGTCCTGTCAGCCTGATTGTAGCCATACTAGCTTCGAAGTCCCTCGTTTTATTATTATCTCAGTATATTAATATTATCATATTTCTAgtggtttttttatttttataattctTGTTGAAAATTATGTTTATCCGTTCAGTTAGTGATTTTTGTAATTCGATTATTGTGTGCTGTGTCTTTTTTAGTTTCTTCACTAGCTACCTATTAACGTTCTAACTAGTAAGGTGGCTAGCAATTAGCCAACGCCTCCCTCCCTTACCAATCATGGCACTGTTTTACTCAAGACGCTTGTAAGAGCTGCCATTGACGGATGTACATCGTCTGGCCAAGACAAGTAGCAAAGCACCGAACTCCAAGTTAAAAACAAGGATTCAAACTTTGTGTCCAGTTACCTTTTCAACTATAAAGGGTCTGCAACCTGGGCCCATAGGCAAAATGACCATCACCAAGCCCACCAAAAAGCGCATGGCAGAAGGAGGGATTACctatgtgacagcctcagaaatgatactcctgtgtaagggtctgcagcgaatcacatccagccgccagagagaagcaaatctaaccacaggacatgtgacagagttgatggacaccctATGTTCATCAATGGACAAAAAGTTCcatagaatggaatataatcacgtGCTATCAGAAACCACTGCACTTGCccccaggtttaagaagttagccttcagtgatgccagagcgattgatgaggctcttcaaagaataacctcagcagcagggagggacagccccacCAGTCAGCTGGCCcaggcaccagggcaacaggaagaagagggatcagatggagcagaagcaccagcagtagtgccacaaacttctgctgtttggatgctgtttgacgagagagcaactggggatgcagcatgaaggaatccctcagcagatgccataatggaggtCCGATGCTATTTGGAGGAGGCCCTCCTCCAAAGATGGAAGAACAAGGCCTCGGTCTACCCACAgcttactaaagtcatgacagggagactgCATAGTGGCCACATCCGTTCCCTCTGAGATGGTCTTCTCAAAAACTGgacaaataattactgagagaagaaacTGCATCAGCCCCTCAAAAGtgaggcagcttgcatttctgaTTGCAAATCTCTCAAAAGCAAAATAtggtcagcattgctgtgtgctgctggttataacaaGAACCGTTTGGGCGCCAAAAGACCCGGCTCTTTTTGGTGACCTGAGCAGAACGAGccggctcactgaaaagagccggaatgcccatcactactGACAAGATGCGATCGGGACAGGAAGCTATGTATCGGGTAGGAAGGTGACCCAAGGGTTGGGAGTGCAAGGCAGAGAGCAGCCAATGGTGCCAGAACGAGccggctcactgaaaagagccggaatgcccatcactactGACAAGATGCGATCGGGACAGGAAGCTATGTATCGGGTAGGAAGGTGACCCAAGGGTTGGGAGTGCAAGGCAGAGAGCAGCCAATGGTGCCAGAACGAGccggctcactgaaaagagccggaatgcccatcactactGACAAGATGCGATCGGGACAGGAAGCTATGTATCGGGTAGGAAGGTGACCCAAGGGTTGGGAGTGCAAGGCAGAGAGCAGCCAATGGTGCCAGAACGAGccggctcactgaaaagagccggaatgcccatcactactGACAAGATGCGATCGGGACAGGAAGCTATGTATCGGGTAGGAAGGTGACCCAAGGGTTGGGAGTGCAAGGCAGAGAGCAGCCAATGGTGCCAGAACGAGccggctcactgaaaagagccggaatgcccatcactactGACAAGATGCGATCGGGACAGGAAGCTATGTATCGGGTAGGAAGGTGACCCAAGGGTTGGGAGTGCAAGGCAGAGAGCAGCCAATGGTGCCAGAACGAGccggctcactgaaaagagccggaatgcccatcactactGACAAGATGCGATCGGGACAGGAAGCTATGTATCGGGTAGGAAGGTGACCCAAGGGTTGGGAGTGCAAGGCAGAGAGCAGCCAATGGTGCCAGAACGAGccggctcactgaaaagagccggaatgcccatcactactGACAAGATGCGATCGGGACAGGAAGCTATGTATCGGGTAGGAAGGTGACCCAAGGGTTGGGAGTGCAAGGCAGAGAGCAGCCAATGGTGCCAGAACGAGccggctcactgaaaagagccggaatgcccatcactactGACAAGATGCGATCGGGACAGGAAGCTATGTATCGGGTAGGAAGGTGACCCAAGGGTTGGGAGTGCAAGGCAGAGAGCAGCCAATGGTGCCAGAACGAGccggctcactgaaaagagccggaatgcccatcactactGACAAGATGCGATCGGGACAGGAAGCTATGTATCGGGTAGGAAGGTGACCCAAGGGTTGGGAGTGCAAGGCAGAGAGCAGCCAATGGTGCCAGAACGAGccggctcactgaaaagagccggaatgcccatcactactGACAAGATGCGATCGGGACAGGAAGCTATGTATCGGGTAGGAAGGTGACCCAAGGGTTGGGAGTGCAAGGCAGAGAGCAGCCAATGGTGCCAGAACGAGccggctcactgaaaagagccggaatgcccatcactactGACAAGATGCGATCGGGACAGGAAGCTATGTATCGGGTAGGAAGGTGACCCAAGGGTTGGGAGTGCAAGGCAGAGAGCAGCCAATGGTGCCAGAACGAGccggctcactgaaaagagccggaatgcccatcactactGACAAGATGCGATCGGGACAGGAAGCTATGTATCGGGTAGGAAGGTGACCCAAGGGTTGGGAGTGCAAGGCAGAGAGCAGCCAATGGTGCCAGAACGAGccggctcactgaaaagagccggaatgcccatcactactGACAAGATGCGATCGGGACAGGAAGCTATGTATCGGGTAGGAAGGTGACCCAAGGGTTGGGAGTGCAAGGCAGAGAGCAGCCAATGGTGCCAGAACGAGccggctcactgaaaagagccggaatgcccatcactactGACAAGATGCGATCGGGACAGGAAGCTATGTATCGGGTAGGAAGATGCTGTTGTGCTGAACTACCTTTCTGAGATGTTTGGACTGCTGGACTCAGTGAGGAGGGTTCTGGACCTGAGACCCGGTGAGACTGATGACAACCAGCAGCAGGTTCACAATGCTCTTAATGgatgttgtgcaTCCCTGGAAATAATCCGAATAATTTAAATATGACAGTTTTGCTGGTAAGGTAAGTTAAGCTGCCTATTTCTGTACTGAATTAAATATAACCACTACTGTTTTAAAACActgtctatctttatttcccaaacacaaatCAGCACAATCACACAATcgattttttttgtgttttaatAATATAAAGCATATTTAACACTGGCTTAAAACCTGACTAGCACtttgtacttttttttaaaacacttaaCTTAGACCAGGCTCTGTTTTCACCTCATATCCCAGCGataatgcaaagaaaacactTACGTTTGCTCAACTTtcaccccaaggcaaacatttagaCTAtgttagcccacacagctacaaggatgcactttcatgctaggtttaggacctcacaTTGAAGCTTATAGAGCAAATCATTTTAGTGTCCCCCCTCTTGACAGGGTAGATATCATTTCctgcaaatctacacatttttccataggGCGGAGAGAAATgcttgcagtttttaatatgatataattgtatataattgtatttaaccttttactgcattGTGCTAACTCAGGGTCACAAAGAGTGtttctactttgaaacaaaagtatacaccacagacatggttatgggcttaaagaaATTAAGACAGCCGTACCATGTGAGGTATAGAGatgaaatgtattccattttgagtttgcatcctaatattacactttatacagtggggcaaaaaagtatttagtcagccaccaattgtgcaagttctcccactcaaAAAGATGAGgccagtaattttca

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU168735 lncRNA downstream 219893 44215687 ~ 44216484 (-) True G147091
TU168724 lncRNA downstream 232875 44198593 ~ 44203502 (-) True G147080
TU168725 lncRNA downstream 234677 44198895 ~ 44201700 (-) True G147081
TU168598 lncRNA downstream 299097 44043733 ~ 44137280 (-) True G146959
TU168154 lncRNA downstream 426570 44009601 ~ 44009807 (-) True G146534
TU168870 lncRNA upstream 1786 44466235 ~ 44467438 (-) True G147224
TU168914 lncRNA upstream 16148 44480597 ~ 44480954 (-) True G147266
TU168915 lncRNA upstream 18009 44482458 ~ 44482711 (-) True G147267
TU168942 lncRNA upstream 53513 44517962 ~ 44518789 (-) True G147291
TU168980 lncRNA upstream 107616 44572065 ~ 44604782 (-) True LOC110490449
XM_021563669.2 mRNA downstream 13492 44084560 ~ 44422885 (-) False LOC110490335
XM_021563676.2 mRNA downstream 13492 44084560 ~ 44422885 (-) False LOC110490335
XM_021563683.2 mRNA downstream 13492 44084560 ~ 44422885 (-) True LOC110490335
XM_036949374.1 mRNA downstream 508096 43924190 ~ 43928281 (-) True LOC118940359
XM_036949367.1 mRNA downstream 512640 43922960 ~ 43923737 (-) True LOC118940358
XM_036949560.1 mRNA upstream 108993 44573442 ~ 44606816 (-) False LOC110490449
XR_005036902.1 mRNA upstream 109556 44574005 ~ 44606817 (-) False LOC110490449
XR_005036903.1 mRNA upstream 109556 44574005 ~ 44606817 (-) False LOC110490449
XR_005036904.1 mRNA upstream 109556 44574005 ~ 44606817 (-) False LOC110490449
XR_005036907.1 mRNA upstream 109556 44574005 ~ 44606817 (-) False LOC110490449
TU168885 other downstream 260 44434790 ~ 44436117 (-) True LOC110490352
TU168015 other downstream 652658 43776063 ~ 43783719 (-) True LOC110490298
TU167341 other downstream 1044248 43372840 ~ 43392129 (-) True LOC110490183
TU167289 other downstream 1163861 43270717 ~ 43272516 (-) True G145767
TU166468 other downstream 1729098 42706818 ~ 42707279 (-) True G145010
TU168978 other upstream 107499 44571948 ~ 44578755 (-) False LOC110490449
TU168984 other upstream 107499 44571948 ~ 44578755 (-) False LOC110490449
TU168994 other upstream 107499 44571948 ~ 44578755 (-) False LOC110490449
TU168976 other upstream 107616 44572065 ~ 44578755 (-) False LOC110490449
TU169520 other upstream 398636 44863085 ~ 44863559 (-) True G147800

Expression Profile