RNA id: TCONS_00028397


Basic Information

Item Value
RNA id TCONS_00028397
length 3524
RNA type mRNA
GC content 0.42
exon number 14
gene id XLOC_014287
representative False

Chromosome Information

Item Value
chromosome id NC_007130.7
NCBI id CM002903.2
chromosome length 48449771
location 43359075 ~ 43432415 (+)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

TGCCTCCTCCAGCGACATTAACTAAGGATGATGGTGTGTATGGAAAGCTGATCTGAGGATCTGCTCTGTTTCCAGGGTGATGAGCTTTGTGCTTTGAGAACATCAGATATTATGGGCTGTGCTTGCTGTAAGCAGAGGAAGGCCAGTAAAGCTGTGTCGAACCAAAACTCCTGCGACGCATTCAATGGGACGCAGGCGTCAGAACCGTCCCGCTACATCCCCGATCCCACATTTAACTCAGGAATCCCAAACTTCAATGATTTCTCAAACCCACTTACTCCTCCAACGTCCATCATCAACCCGGCACGTCCTCCTGGACTCACAGGAGGTGGCGTGACCCTCTTTATAGCCCTCTATGAATATGATGCTCGTACTGAAGATGATCTGAGCTTCCAGAAAGGAGAAAAGTTTCATATTATCAACAACACcgAGGGCGACTGGTGGGAGGCTCGATCTCTAGACACTGGCAAATCTGGATATATTCCCAGTAACTATGTGGCTCCTGTGGACTCCATACAGGCTGAGGAGTGGTATTTTGGGAAGATGGGCCGGAAAGATGCTGAACGACAGCTGCTGGCGCAAAACAATCCCAGAGGGACATTTTTAATACGCGAGAGCGAGACAACTAAAGGAGCTTATTCTTTGTCCATCAGAGACTGGGACGATGCGAAAGGCGATCACGTCAAGCATTACAAGATCAGGAAGCTGGACAACGGTGGATATTACATCACAACCAGGACTCAGTTTGATACAGTCCAGCAGCTGGTGGAGCATTACACAGAGCGGGCAGCAGGGCTGTGCTGCCGTCTGATTGGCAGCTGTAGGCGGGGCATGCCTAAGCTGGCCGACCTATCAGTGAAGACCAAAGATGTTTGGGAGATTCCAAGAGAGTCCCTTCAGCTCATTAAGAAACTGGGCAATGGGCAGTTTGGTGAAGTGTGGATGGGCATGTGGAACGGCACCACTAAAGTGGCTGTGAAAACGCTGAAGCCTGGCACCATGTCTCCTGAAGCCTTCCTGGATGAGGCGCAGATCATGAAGAGGCTCCGTCATGATAAACTGGTTCAGCTTTATGCTGTGGTGTCCGAGGAGCCTATCTACATCATCACCGAGTTCATGAGTCAAGGAAGCTTATTGGACTTTTTGAAAGATGGTGATGGCAGAAATTTAAAATTGCCTCAACTTGTGGACATGGCAGCACAGATCGCTGCCGGCATGGCCTACATCGAGCGGATGAACTACATCCACCGAGACCTGCGAGCTGCCAATATCCTGGTCGGAGACGGTCTGGTCTGTAAGATTGCAGATTTCGGTCTGGCTAGACTGATCGAGGACAACGAGTACACAGCTAGACAAGGAGCGAAGTTTCCCATTAAGTGGACTGCACCGGAGGCGGCTCTCTATGGTAAATTCACCATCAAATCAGACGTATGGTCTTTCGGCATCCTGTTGACGGAGCTGATTACCAAGGGCAGAGTGCCATATCCAGGAATGAACAACCGAGAGGTGCTGGAGCAGGTGGAGCGCGGATACCGTATGCCGTGTCCGCAGGGCTCGCCGGCATCTCTGCACGAGCTCATGCTTCAGTGCTGGAGGAAAGACCCCGATGAGAGGCACACATTCGAGTATCTGCAGAGCTTCCTGGAGGATTACTTCACCGCCACCGAGCCCCAGTACCAGCCCGGAGAGAACCTGTGATAGACACACTTATGTCCATTAGTTCAATATATCCTTCAGGAAAGACGCCGTCGCCTTTACTTTCTAGCACAGTACCTCCATAAACTGATTTTTGATCCACAGCTTCTCAATCACAAGCTTCAGTGCAACCGCTCATCTTGTGCTTTGGTTTGAGACTTACTTGCAAGCTTAGGTCACTTTTGAGAAGTAAAACAGTCTAAGACGTCGATTTATTTAACTTGAGCACATTAATATGCCTGTCTgctgattaaagggatagtttgctcAAAAAATGGctgatcatttactcacactttcaTGTTTCTATCTTCAGAAGAATGCTGAAACctggtaaccattaacttccattgtattttgtgtgtgtgtgtttttcctactatggaagtcaatggttaccggtttccaacattcttcaaaatatcttcttttgtgtttagtaaAGTTTTGGAGCCACTTTTGGAGTaaatattaagtacatttttatttttgagtgaactatcccttaaagctATTAAGCACACACTGTATGTAATCATATTAATACCTACTTGTTTCTCTATATCCATCTACTGTGTCTGAATGTAGACGACTCGTCATTTTTGATGTGTGGTTAACTTGTTGAGTTATTTTAGTCTGTAGAACAGAAAATCTCTGCTAGATGTTCAATGGTTACCTGGAcaactaaggccctgtttacacctgatcttaaagggatagttcatccaaaaattaaaactgactcactatttactcaccctcaaacgttacgagtttctttttttttttgtcgaatacaaaagaagatattttgaagaatgttgaaaacgggtaaccattgacttccatagtaggaaaaaacaattacttttggttttaaacattaaacattaagaCACTGAATATTTTGAAGTGAAGTGAGttaatgatgactgaattttcagttttgggtgaactaaaattatttaaagatgcGTTTAGGTGTTTCGTTTTCACTGTTTGACcactttcatgattttttttcaaaagcatgATCTTTAGCCAGGTGCATTGATGGACGTGTTTAGGTTTATTTACAACtaatattgctaaaaaaaaacaataagacaATGGAAAACTATCCATTTAGCCAGAAAACTACACCGACCCCTCTGGATTTGTGTTAGAattaaatcatgatttttttttcttcttaagatTTCAGACACCAAcatgtgtgaatggatgttttttttttgtggccaTTTGAATGAAAAACAATCAGATCTAATGCATTTTCAGCTATTTCTGGAAGCTCAACTAGTTTGTGTTTGGAGTCATCAGTTACAGATATTAACTTAAATGCATCCTAATGCTGTGTAAACAGGgtctgattaaaaaaatcaacattgaATGCAACGCTGAAGCCAAAAATTCACTTGAAATTTCAGAAGAGGTGTGTTTGCATGTCAAGACACTTCAAGATGCGTTTGTTTCTTTAAGCCAGTCATGTCATAGCTTTATAACCTTTCTTTGTTTAATTGTGAACCTAACAGTCTTATATTATCTTACTAGAAAGCAGTTCTGTCATATAATAAGGAGACTTGATGTCagcaaacaaaaaagactttcttcagagcTGTCCTTTGAAATGAAACATTGCTGCAATGCATCCTGtatttttacactgtattttacattttatgtcaTATCTCAATAATTTAAGTACCTATCAAATCTGTGCCTTAATTGGGGGGTTACAGTGAAAACTATAGCCCTGAACTGGGGAATGTGTATTACAGTTATGCAATGTGTTTGTGCCAATCTATTACACTGAGCTTACTGAACTG

Function

GO:

id name namespace
GO:0045087 innate immune response biological_process
GO:0042127 regulation of cell population proliferation biological_process
GO:0007229 integrin-mediated signaling pathway biological_process
GO:0030154 cell differentiation biological_process
GO:0038083 peptidyl-tyrosine autophosphorylation biological_process
GO:0048246 macrophage chemotaxis biological_process
GO:0006468 protein phosphorylation biological_process
GO:0016310 phosphorylation biological_process
GO:0007169 transmembrane receptor protein tyrosine kinase signaling pathway biological_process
GO:0031234 extrinsic component of cytoplasmic side of plasma membrane cellular_component
GO:0005102 signaling receptor binding molecular_function
GO:0016740 transferase activity molecular_function
GO:0005524 ATP binding molecular_function
GO:0000166 nucleotide binding molecular_function
GO:0004672 protein kinase activity molecular_function
GO:0016301 kinase activity molecular_function
GO:0004713 protein tyrosine kinase activity molecular_function
GO:0004715 non-membrane spanning protein tyrosine kinase activity molecular_function

KEGG:

id description
ko01001 Protein kinases
ko04131 Membrane trafficking

ZFIN:

id description
ZDB-GENE-030131-9517 Predicted to enable non-membrane spanning protein tyrosine kinase activity and signaling receptor binding activity. Acts upstream of or within macrophage chemotaxis. Predicted to be extrinsic component of cytoplasmic side of plasma membrane. Is expressed in blood island; cardiovascular system; head; mesoderm; and post-vent region.

Ensembl:

ensembl_id ENSDART00000193859

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00030038 lncRNA upstream 107943 43250553 ~ 43251194 (+) True XLOC_014282
TCONS_00030037 lncRNA upstream 279299 43072693 ~ 43079838 (+) False XLOC_014278
TCONS_00028378 lncRNA upstream 279299 43074643 ~ 43079838 (+) True XLOC_014278
TCONS_00028377 lncRNA upstream 279459 43072693 ~ 43079678 (+) False XLOC_014278
TCONS_00028372 lncRNA upstream 331654 43024687 ~ 43027483 (+) True XLOC_014277
TCONS_00030040 lncRNA downstream 114234 43546647 ~ 43549011 (+) False XLOC_014291
TCONS_00030039 lncRNA downstream 114234 43546647 ~ 43549011 (+) True XLOC_014291
TCONS_00028407 lncRNA downstream 160426 43592839 ~ 43599344 (+) True XLOC_014293
TCONS_00028415 lncRNA downstream 283557 43715970 ~ 43724855 (+) False XLOC_014297
TCONS_00030041 lncRNA downstream 354590 43787003 ~ 43791576 (+) True XLOC_014300
TCONS_00028391 mRNA upstream 1680 43341176 ~ 43357457 (+) False XLOC_014286
TCONS_00028390 mRNA upstream 8785 43341115 ~ 43350352 (+) False XLOC_014286
TCONS_00028392 mRNA upstream 9556 43341424 ~ 43349581 (+) True XLOC_014286
TCONS_00028388 mRNA upstream 20857 43314700 ~ 43338280 (+) False XLOC_014285
TCONS_00028389 mRNA upstream 27518 43314738 ~ 43331619 (+) True XLOC_014285
TCONS_00028402 mRNA downstream 7044 43439457 ~ 43500299 (+) True XLOC_014288
TCONS_00028403 mRNA downstream 72067 43504480 ~ 43515396 (+) True XLOC_014289
TCONS_00028404 mRNA downstream 91277 43523690 ~ 43543128 (+) True XLOC_014290
TCONS_00028405 mRNA downstream 130766 43563179 ~ 43572298 (+) True XLOC_014292
TCONS_00028406 mRNA downstream 147373 43579786 ~ 43603932 (+) False XLOC_014293
TCONS_00028380 other upstream 278077 43080925 ~ 43081060 (+) True XLOC_014280
TCONS_00028379 other upstream 281258 43077744 ~ 43077879 (+) True XLOC_014279
TCONS_00028365 other upstream 443596 42915419 ~ 42915541 (+) True XLOC_014274
TCONS_00028353 other upstream 623852 42732688 ~ 42735285 (+) False XLOC_014270
TCONS_00028342 other upstream 1021706 42337317 ~ 42337431 (+) True XLOC_014261
TCONS_00028401 other downstream 6988 43439401 ~ 43451947 (+) False XLOC_014288
TCONS_00028411 other downstream 232978 43665391 ~ 43665511 (+) True XLOC_014295
TCONS_00028433 other downstream 577060 44009473 ~ 44032164 (+) False XLOC_014312
TCONS_00028436 other downstream 2076452 45508865 ~ 45508981 (+) True XLOC_014316
TCONS_00028450 other downstream 2811207 46243620 ~ 46280931 (+) False XLOC_014327

Expression Profile

//

Homologous

species RNA id representative length rna type GC content exon number chromosome id location
grasscarp (Ctenopharyngodon idella) CI01000054_01042925_01056338.mRNA True 2207 mRNA 0.49 12 CI01000054 1042891 ~ 1056561 (+)