RNA id: TCONS_00028439


Basic Information

Item Value
RNA id TCONS_00028439
length 3264
RNA type mRNA
GC content 0.39
exon number 2
gene id XLOC_014320
representative True

Chromosome Information

Item Value
chromosome id NC_007130.7
NCBI id CM002903.2
chromosome length 48449771
location 45970692 ~ 45980732 (+)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

GACTGTGTGTCCAGTGACAGAGCTGAATCTACAGCTGACCACAAGTCATGGAAGTAGTTTTGAGCAGACTGAGGGATTTCTCCAGCAAGCAGAGCTCTTTTGAGGAGTGTGAAACAGCAATGGTGTGCAGGGATTATTCCTTAACACTGGAGGAGAAGAAAAGGGATGCGGGACGGCTGGACATTCAGACTGCGCTCGTCTGGCTGAGGAAAGAGCTGATGGAGATGCGCTCTCAGGACCAAGCGTTGATTCGCCAGCTGATGGATCTCCATGATGGCATTCAGGAACTGAAGCAGGAGTGTGAAAAAGCcatagaggaggaggaggaagaggaagaagaagcaGGCTGGGACTCTGGCAGTGAAGGAGGAGCGAGCAGCATGTCCTCATACTCTGGAGAAATGAGCTTCTGCACCTCCACCTACTCCTTCAGCTCATGCATGAGTCCTGCTTCTCCAGCGTTCCTCTCAAAACGGGTCTTCAGCAGACGCAGCTCTGTGCCATGAACCAACAATTACACTCATATCCATCTTacattaaagaaacactccatttttttttttttttttggaaatagggtCATCTTATACCTGTTAAACAGCTGAGTTTTGCCATTTtggaatccattcagccaatctccgggtctagctggagcacatttagcttagcttagcatagaccattgaatcagattagaccattagcatttcagaAAAGATCTTTTCAGACAGAAAGTTTGAAGTTGTTATATTCTAGACCGATATGGCCAGAACTATattctcattctggcataataatcaagataTTTGATTAGGGGATTATCAGTAATGATATTACCACATAATATCAGTCCACCTCCTGCAGCCAAACAATAGCAACTTTTGATTTGAGGTCAGTTTTAATAAACAGTGTAAGTCAAACTGTGTGGAAAAATTAACTAAACTCTGATTTATGAgagagatgctaacggtctaatcccaTTCATTCAAGGTAACCTGAAAGTGCTTCCATCAAACCTAGTGATTGGCTCATTTACTAcagagatgctaacggtctaattcgattcaatggcctatgctaagctaagcttaaagtgcTTCCAGTAAACCTAGAGATTGGCTCATTTAtaaaagatgctaatggtctaatctgattcaacgatttatgctaagctaggtTAAAAGTGCTTCCGCCAAACCTAGAGATCATCTCATTTATGAAGGAGATGGTAACGGTCTAATcccattcaatgatttatgctaagctacgaTAAAAGTGCTTCCATCAAACCTAGAGTTCGGCTCACTgagagatgctaatagtctaaaccgattcaattatctatgctaagctaagctaaaagtgcttccagtAAACCTAGAGATTGGCTCATTTAtgaaagatgctaatggtctaatccgattcaatgatttatgctaagctaagcttaaagaACTTCCAGTAAACCTAGAGTTCGGCTCACTTATGAgagagatgctaacggtctaatacCATTCAATGATCTATATACTGAAGTAAACTAAAAATACTTCCCCAAAACCTAGAGATCAGCTTATTTATgaaagagatgctaatggtctaacccAATTCAATAAGCAACACTAGGCTAAGATAAAAGTGCTTCCATCAAACCTAAAGATCGGCTcattgagtgagatgctaatggtctaatcctattcaatgatctatgctaagctaaatgtgcttcTGTCAAACCTAAAGATCGGCTCATTTAttagagagatgctaatggtctaatcccattcaatgatctatgctaagctaagctataagTGCTTTCAGCAAACGTAGAGATCGGCTCGTTTATgagagatgctaacggtctaatctgattcaatgatctatgctaagctaagctaaaagtgcttccatcAAACCTAAAGATTGGCTCATTTGTGTGAGCGAAGCTAATGGTTTAATACGATAcaatgacctatgctaagctaagctaaaagtgcttcccgCCCAACCCCGAAATCAGCTCAtttatgagatgctaatggtctaatccgatccCATTCAATgacgctaagctaagctaaaagtgcttccgccaAACCTAGAGATTGGCTCATTTAtaagagagatgctaatggtctaatccgatttaatgatctatgctaagttaagctaataaacgtcgcctcgtggttccatcccaaagagggaagaaatcactttcccgaactctcgcattcaatctgcccagttggtggaatgatctccctaactgcatcagaacagcagagtcactcgctgtcttcaagaaacgactaaaaactcaactatttagtctccacttaccttcctaatctgcaactgcctctctggctccaccgctaactgtattacagaaaaaaaatactaatgttttgcttcttacactttacatacctgaaacttgcctacagcacttattcattgttgctcttatagttgtgtaagttgcttccttgtcctcatgtgtaagtcgctttggataaaagcgtcggctaaatgactaaatgtaaatgtaagctaaaagtgcttctggtAAACTCAGACATcagctaaatggattaaaaaaatgttaaaaatcaaTAGTTTAACTCTGgaagagctgtaaaatgagcccatTTCCAAAAAAAAGCGGAGTATTCCTTTAATAGAAATCTTATCTCGTCTTACAGTTCGAGATATGTATACATCGTTTATACTGTACTATACAGTATATCAACAAAGTCAAAAAGTGAAAACAAATGTGAATGTTTGAAACTGTGATGAACTTGACAATGTCTTTGGTGACAGACTGCTGCTGAATGTTTGATTGTCACTTGACAAAACTGAAGTGCctcttctttggggcttctccacaacGTAACTCTCCCTGATGTGGGATAGACAGTGATGGTGGATGGTGGACCTCACTGTTCTCAGCACAAGATCTTCCCTGCTGGTATCACTAAAATGGACTCTTTGTAAACACGTATAGAGGTGTACTCTTTGAATGCTGATTAATGAACTTTTCTTTGTATTATGACAGTCATGAGTACAACGTGACAAGATTTAGGTGTTTTTTAAAGCAAGACGTGAACAAATATTCACTGATGATCTAACTCTTCTAAGACACATATCATGTTATTAatgatatacagtataaacaTTAAAACCTGatcagttttggtggaaacatcTCATGAAGCAATGAGTTTAAATCaagacattttaataaacatatgatGC

Function

GO: NA

KEGG: NA

Ensembl:

ensembl_id ENSDART00000158781

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00030046 lncRNA upstream 242630 45727214 ~ 45728062 (+) True XLOC_014317
TCONS_00030045 lncRNA upstream 604965 45359277 ~ 45365727 (+) True XLOC_014315
TCONS_00029734 lncRNA upstream 1010994 44917099 ~ 44959698 (+) False XLOC_014314
TCONS_00030047 lncRNA downstream 110585 46091317 ~ 46093652 (+) True XLOC_014321
TCONS_00028445 lncRNA downstream 177410 46158142 ~ 46172318 (+) True XLOC_014324
TCONS_00029735 lncRNA downstream 235603 46216335 ~ 46219040 (+) False XLOC_014325
TCONS_00029736 lncRNA downstream 236377 46217109 ~ 46219040 (+) True XLOC_014325
TCONS_00030048 lncRNA downstream 259775 46240507 ~ 46280931 (+) False XLOC_014327
TCONS_00028438 mRNA upstream 2974 45962016 ~ 45967718 (+) True XLOC_014319
TCONS_00028437 mRNA upstream 7428 45844363 ~ 45963264 (+) True XLOC_014318
TCONS_00028435 mRNA upstream 1923516 44039849 ~ 44047176 (+) True XLOC_014313
TCONS_00028434 mRNA upstream 1933900 44009473 ~ 44036792 (+) True XLOC_014312
TCONS_00028432 mRNA upstream 1964247 44004348 ~ 44006445 (+) True XLOC_014311
TCONS_00028440 mRNA downstream 114478 46095210 ~ 46100763 (+) True XLOC_014322
TCONS_00028441 mRNA downstream 133096 46113828 ~ 46122870 (+) False XLOC_014323
TCONS_00028442 mRNA downstream 133195 46113927 ~ 46148977 (+) True XLOC_014323
TCONS_00028443 mRNA downstream 177346 46158078 ~ 46210892 (+) False XLOC_014324
TCONS_00028444 mRNA downstream 177346 46158078 ~ 46210904 (+) False XLOC_014324
TCONS_00028436 other upstream 461711 45508865 ~ 45508981 (+) True XLOC_014316
TCONS_00028433 other upstream 1938528 44009473 ~ 44032164 (+) False XLOC_014312
TCONS_00028411 other upstream 2305181 43665391 ~ 43665511 (+) True XLOC_014295
TCONS_00028401 other upstream 2518745 43439401 ~ 43451947 (+) False XLOC_014288
TCONS_00028380 other upstream 2889632 43080925 ~ 43081060 (+) True XLOC_014280
TCONS_00028450 other downstream 262888 46243620 ~ 46280931 (+) False XLOC_014327
TCONS_00028459 other downstream 1318434 47299166 ~ 47309383 (+) False XLOC_014336
TCONS_00028462 other downstream 1325891 47306623 ~ 47306738 (+) True XLOC_014337
TCONS_00028470 other downstream 1593883 47574615 ~ 47574823 (+) True XLOC_014344
TCONS_00028474 other downstream 2037274 48018006 ~ 48018346 (+) True XLOC_014351

Expression Profile

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