RNA id: TCONS_00028443


Basic Information

Item Value
RNA id TCONS_00028443
length 3191
RNA type mRNA
GC content 0.44
exon number 13
gene id XLOC_014324
representative False

Chromosome Information

Item Value
chromosome id NC_007130.7
NCBI id CM002903.2
chromosome length 48449771
location 46158078 ~ 46210904 (+)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

GTAACCTTCTCTGATTCATCCTTCTTCCCAAATATGGAGTTCCCGGAAGCGGCCGCCGGGACTCAGTTGAGTGACAGCAGGAGCCGCAGCGCCAGACCTCCTTAATATCCGATCCACATCTCGCTTTTTATAAAGAAAACGTGAGAACAAAGCCCGGACCGCACCATCTGAGGAGTGTTTGTTATGGAGGCTCTGGTTGGTCGTCTGGAGCGGGCAGTGGTGCGTCTGGAGGCTGTGGCTGTCAAACTGCAGAGCTGTCCTGGAGGATTGATCAACGGAGACATCAGCGCCGTCATCAACGGAGGTGAATCCCAGAGCATGGAGGCGTTTGACCGTCTGCTGAGCGGCTCGGTGTCTGAATATGTGCAGTCCAGTGCTGCGATTGGTGGAGACGTAGCGAAGCATGCTGAGATGGTGAATAATGCTCTGCAGGTTCAGCGCACTCTCCTCAAAATGGCCATGACACACCAGGAGCCAGCAAAGACGGAGCTGGCTGACCTCCTCAGACCTCTATCCGACCAGATCCAGGCGGTGCAGAATTTTCGTGAGAAGAACCGCGGCAGCAGCCTGTTCAACCACCTGTCTGCAGTGAGCGAGAGCATCCCTGCGCTGGGCTGGGTGGCTGTGTGTCAGAAACCAGGGCCGTATGTGAAGGAGATGAACGATGCTGCCATGTTTTATACTAATAGAGTGCTGAAAGATTTCAAAGACACTGACGCTCGTCATGTGGAGTGGGTGCGTTCATACCTGAGCATCTGGACTGACCTGCAGACGTTCATCAGAGAGCATCACTGCACTGGACTCATCTGGAGCAAGACTGGTCCAAAAGCTCCTCCCTCTCTGCTCAGtgctcctcttcttcctcctcctcctcctcctcctcctccaatGATGATTGACAGCTGCAGTTCTCCAGCAGATGCTTCATCAGTCCAGCACGCGGCTCTGTTCGCTCAGCTCAACCAGGGAGAGGAGATCACCAAAGGTTTAAAGCATGTGTGTGATGAACAGAAGACCCATAAAAACCCAAACCTGCGTTCTCAGAGTGGAAAAACACACCATGACTCTCCGTCCAAAACCCAGAGCTCTTCCTCATCTAATCCGGCCAGGAAACATCCACCCGTGCTGGAGCTGGAGGGCAAGAAGTGGAGGGTGgagtaTCAGGATCAGTGTGCAGAGCTGCTGATCGAGGACACAGAGCTCAGACAGGTGGTTTACGTCTTCAGCTGCAGCGGCTCCACACTGCAGGTCAAAGGCAAAGTCAACTCCATCATCGTGGATAACTGTAAGAAGCTGGGCCTGGTCTTTGACAATGTGGTGGGCATCGTGGAGATCATCAACTCCAGAGATATTCAGCTTCAGGTGATGGGAAAAGTTCCGACTATCTCCATAAACAAGACCGAGGGCTGCCATGTCTACCTGAGCAAGGATTCACTAGACTGTGAGATCGTCAGTGCCAAGAGCTCCGAGATGAACATCCTGGTTCCCGAGGGAGAAGATGATTATAGGGAGTTTCCAGTTCCAGAGCAGTTTAAAACGGTCTGGGACGGCTCCAGCCTGGTGACCGAGCCCACAAAGATCGCCGGCTGATTGATCTGCCTCCTCCTACCCACAATTCCTCAAGCACTTTCACTAGATCACTGTTAGCTGACACGGAAGAATCCGCACACTGTGCTTGTGGGAGTTGTAGATTTAGACAATTACAGTTATGAGCAATATATGGACAAACACGTCTGACTTCCCCAGACCCACTGTGCTTTAAACAGATCGCTGATGGATATTTTTGTCCTAAAGctgttatcattatcattatttttaccaTTATTATACATTAACAATATTTACACAGCATGATGGAACCATTATGTGTTGAATTAGGGGTGTGCGATATTTAAGGTAAGATAAGgtcataactaggcccacacggaatctgtgcgcgcagattttccacagatttttagcccatcattaattctgtttgtttacttgagtaaatgtgtgtaaatctatatttattcagttttttttttattaatttcagtaatattagtgactaatatgaaaatgttcatgtgatttatgcacaatgcagtttgtacagtcaaattttctgtcttttagtagagatattatatgagagacttgctttgttcaccaaataaagtggatctaattggatttgcattttaaacgttaaataaaagttaaaaaggtattactttttacttcacatattaaggttttagttatgatactctcaaaataatgctgatttttaccaaaattttccgcagaaatagcaaaaaacttctgcagattccgtctggccctggtcataGCTGCTGGTTTATTTATAAGCCATCTGACACAAACACACGAGTCTGAAAGCATTGACTGTGTAATGAAACTTGATCAAATGAATCCAAAAATgtcgtttttatattttaaacttatgATACAGTTCAGTATTTACACAAGCAAGAGCTAACAATGCTTgatgggtttccaccgggtgctccggtttcccacaaagacatgcggtattgaggaattgggtgagctaaattgaccgtagtgtatgtgtatgaatgagagtgtgtggatgtttcccagagatgggttgcagctggaagggcatccactgcgtaaaacatcctggataagttggcggttcattccactgtggcgaccccggataaataaagagacttagctgaaaagaaaatgaatgaaataaaaaaaatgagagATGTGATTTTTGGTCAATATCGCACACTTCTAATGTAAACATGGCAATTTTTAGGTCAGCAACTTAAACGTATTAAGTCAAAGTCATAAATAAGTTAAAATGTAACAGTACTGTATGGTGTTTGCAAAACTCATACGTTAAAACACCTTCTGGTCCTGTATTAGGtattcaaaaaattaaatattcttcAGTATATTTTACCAATACTTGAGTCTCTTGATAGATAAAACCATCCACAATCCTGTTTGATGCAGTTTCCCAGGGTTTACAGATGCTGCTTTCAGCTCATAACATTTCCTCACGCAGTAAATAATCATTGTTGTTATTTGGCTCTGGACGCAGACCCTGTGCAATCATTTGCAGAGGAGAAATGTACACTTAGTCATTTAGCAAACTATTTTCTCCAGATGGAATGAATgccaatttaaaatgaataaacatc

Function

GO:

id name namespace
GO:0008154 actin polymerization or depolymerization biological_process
GO:0045761 regulation of adenylate cyclase activity biological_process
GO:0000902 cell morphogenesis biological_process
GO:0007010 cytoskeleton organization biological_process
GO:0007163 establishment or maintenance of cell polarity biological_process
GO:0030864 cortical actin cytoskeleton cellular_component
GO:0008179 adenylate cyclase binding molecular_function
GO:0003779 actin binding molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-040426-1758 Predicted to enable actin binding activity and adenylate cyclase binding activity. Predicted to be involved in cAMP-mediated signaling; cell morphogenesis; and regulation of adenylate cyclase activity. Predicted to act upstream of or within cytoskeleton organization. Predicted to be located in plasma membrane. Predicted to be active in cytoplasm. Is expressed in central nervous system; heart; male organism; muscle; and neural tube. Orthologous to human CAP2 (cyclase associated actin cytoskeleton regulatory protein 2).

Ensembl:

ensembl_id ENSDART00000183933

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00030047 lncRNA upstream 64426 46091317 ~ 46093652 (+) True XLOC_014321
TCONS_00030046 lncRNA upstream 430016 45727214 ~ 45728062 (+) True XLOC_014317
TCONS_00030045 lncRNA upstream 792351 45359277 ~ 45365727 (+) True XLOC_014315
TCONS_00029733 lncRNA upstream 1198380 44917099 ~ 44959698 (+) False XLOC_014314
TCONS_00029735 lncRNA downstream 5443 46216335 ~ 46219040 (+) False XLOC_014325
TCONS_00029736 lncRNA downstream 6217 46217109 ~ 46219040 (+) True XLOC_014325
TCONS_00030048 lncRNA downstream 29615 46240507 ~ 46280931 (+) False XLOC_014327
TCONS_00030049 lncRNA downstream 212199 46423091 ~ 46438135 (+) True XLOC_014331
TCONS_00030050 lncRNA downstream 977638 47188530 ~ 47191501 (+) True XLOC_014334
TCONS_00028442 mRNA upstream 9101 46113927 ~ 46148977 (+) True XLOC_014323
TCONS_00028441 mRNA upstream 35208 46113828 ~ 46122870 (+) False XLOC_014323
TCONS_00028440 mRNA upstream 57315 46095210 ~ 46100763 (+) True XLOC_014322
TCONS_00028439 mRNA upstream 177346 45970692 ~ 45980732 (+) True XLOC_014320
TCONS_00028438 mRNA upstream 190360 45962016 ~ 45967718 (+) True XLOC_014319
TCONS_00028446 mRNA downstream 11536 46222428 ~ 46238622 (+) False XLOC_014326
TCONS_00028447 mRNA downstream 12026 46222918 ~ 46238622 (+) False XLOC_014326
TCONS_00028448 mRNA downstream 26773 46237665 ~ 46238624 (+) True XLOC_014326
TCONS_00028449 mRNA downstream 29279 46240171 ~ 46257880 (+) False XLOC_014327
TCONS_00028451 mRNA downstream 48727 46259619 ~ 46303622 (+) True XLOC_014327
TCONS_00028436 other upstream 649097 45508865 ~ 45508981 (+) True XLOC_014316
TCONS_00028433 other upstream 2125914 44009473 ~ 44032164 (+) False XLOC_014312
TCONS_00028411 other upstream 2492567 43665391 ~ 43665511 (+) True XLOC_014295
TCONS_00028401 other upstream 2706131 43439401 ~ 43451947 (+) False XLOC_014288
TCONS_00028380 other upstream 3077018 43080925 ~ 43081060 (+) True XLOC_014280
TCONS_00028450 other downstream 32728 46243620 ~ 46280931 (+) False XLOC_014327
TCONS_00028459 other downstream 1088274 47299166 ~ 47309383 (+) False XLOC_014336
TCONS_00028462 other downstream 1095731 47306623 ~ 47306738 (+) True XLOC_014337
TCONS_00028470 other downstream 1363723 47574615 ~ 47574823 (+) True XLOC_014344
TCONS_00028474 other downstream 1807114 48018006 ~ 48018346 (+) True XLOC_014351

Expression Profile

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