RNA id: TCONS_00028451


Basic Information

Item Value
RNA id TCONS_00028451
length 1803
RNA type mRNA
GC content 0.50
exon number 7
gene id XLOC_014327
representative True

Chromosome Information

Item Value
chromosome id NC_007130.7
NCBI id CM002903.2
chromosome length 48449771
location 46240171 ~ 46303622 (+)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

ATTTACTGCAGCCAACGTCAACACAAGCCAACGCACGGACAATATTTCTGCCGGTGTTTCATAAGAAAACGGCATATTTCACTGCGCGTCGTTTAAACTCAAAGGACTGCAGTGAGGGAAGGAGACATGTCTCAGGACAAGCAAACCTACCCCATAATGGGGGAAAATAACCCCCTTCACAACAATGTCTACGGGCCCCCCAAAACGGATGCCTTTGGAATGCCTCCTCCAAACTACAGCCAGGGTCCAGGGGCCCCTCCGTATGCGGCACCAGGACCCTATGGTCCACCCGATTATGGCCAGCCTGCCTACGGCCAGCCTCCAGCACCAGGGTTTGGTCCTGGCCCTGGCCCATACCCACAGATGCCATATCCACAGATGCCATACCCGCAAGCGAACTACGCTCAAGGGCCGTACCCTCAGAGCCCATACCAGCAGGGGCCCGGCCAGCCCGCCTTCGGTGTAGATCCTAATGCTTCTATGGAGAGTCCTGGATATCACGGTGGAGACGGACCTCCGTCTTACTACGGAAATGACGACTTTGCAAACTCCAACTGGGAAGATAAGAGTATCCGACGGGCCTTCATCAGAAAGGTGTTCATGGTGTTGACCGTGCAGCTGTTGGTCACCTTCTCCTTTGTCACGGTTTTTACCTTCGCGAAAGACGTCAAAGTGTTTGTGCGGAGAAACCAGTGGACGTATTACGTGTCCTACGCCATCTTCTTTGTGTCTCTGATCGTTCTCAGCTGCTGTGGAGAAGTGCGCCGCAAACACCCATGGAACCTGGTGGCACTGtcCATCCTGACTCTGAGTCTGTCCTATTTGGTTGGCATGATTGCCAGCTTCTACGACACGGATGCGGTCATCATGGCGGTGGGCATCACTGTAGTCGTCTGCTTTGCTGTTGTGGTCTTTTCACTCCAGaccaAATATGACTTCACCTCCTGCTATGGTGTTCTGCTGGTGTGCACGATTGTCCTGCTGGTCGCCTGCATCCTCTGCATCTTTATCCGAAACAAGATCCTGCACATTGTCTATGCTTCACTCGGAGCTCTGCTGTTCACTTGCTTTCTGGCCGTGGACACTCAGCTTCTGCTGGGCAATAAGAAGCTGGCCATCAGCCCGGAGGAATACGTCTTCGCAGCTCTCAACCTCTACACCGACATCATCAACATCTTCCTCTACATCCTGGCCATCGTGGGCCGCACCAGGGACTGAGCACCCCCTGCTGCCACAGGAGGGAAGCGCAGTCCACTCTCAGACCTCACCGCGATCCACCCTCCCTCATCTATTCTGCATTCTCTCCCTCTCACACATTCCCCACAAAGGCTCCTCAGGCCACATCGCAAAAGATTTAAGCAGCGTCACTTGCTCTTTTCCTTCCCGATAAATCCTGCAAAGATgaattgaggtgaagttggttttattgtTCATCCTtaatttgaatattgggtctgaaatggCATTGAGTATGACTTCAGCACTGTTTAATTGACCGCAGGCACTATTCGGTGGCTGCTATATGGTAGATGAGGCTTCTAATATGATTttgttaaggagaaagtcagattGTTTGATTATAAAACCGACTTTACCTCCAATTGAAGATGATATGATTTAAAAAGTTGCATCCCGAAAACCGGCATGGCAGAATAAATCACATCGCAGGAAATAAGAGCAGATTAAAGTCAAATAAAAGCGCCCGCATGACCGTCTTAGCACAGCCCAGAATGATTCCTCTCTTAAACCCCCTGCGTGTTTGACTCTAGGTGTAAATAATCCAATAAAAGCAACAGTTTTAGG

Function

GO:

id name namespace
GO:0035556 intracellular signal transduction biological_process
GO:0006468 protein phosphorylation biological_process
GO:0010468 regulation of gene expression biological_process
GO:0016310 phosphorylation biological_process
GO:0005634 nucleus cellular_component
GO:0005737 cytoplasm cellular_component
GO:0016740 transferase activity molecular_function
GO:0005524 ATP binding molecular_function
GO:0000166 nucleotide binding molecular_function
GO:0004672 protein kinase activity molecular_function
GO:0004674 protein serine/threonine kinase activity molecular_function
GO:0016301 kinase activity molecular_function
GO:0004707 MAP kinase activity molecular_function

KEGG:

id description
ko04657 IL-17 signaling pathway
ko01001 Protein kinases

ZFIN:

id description
ZDB-GENE-060616-231 Predicted to act upstream of or within cellular response to cold. Located in endoplasmic reticulum and mitochondrion. Is expressed in head; intestine; and nervous system. Orthologous to human GRINA (glutamate ionotropic receptor NMDA type subunit associated protein 1).

Ensembl:

ensembl_id ENSDART00000158032

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00029735 lncRNA upstream 40579 46216335 ~ 46219040 (+) False XLOC_014325
TCONS_00029736 lncRNA upstream 40579 46217109 ~ 46219040 (+) True XLOC_014325
TCONS_00028445 lncRNA upstream 87301 46158142 ~ 46172318 (+) True XLOC_014324
TCONS_00030047 lncRNA upstream 165967 46091317 ~ 46093652 (+) True XLOC_014321
TCONS_00030046 lncRNA upstream 531557 45727214 ~ 45728062 (+) True XLOC_014317
TCONS_00030049 lncRNA downstream 119469 46423091 ~ 46438135 (+) True XLOC_014331
TCONS_00030050 lncRNA downstream 884908 47188530 ~ 47191501 (+) True XLOC_014334
TCONS_00030051 lncRNA downstream 1033960 47337582 ~ 47338157 (+) True XLOC_014339
TCONS_00028467 lncRNA downstream 1117438 47421060 ~ 47423627 (+) True XLOC_014340
TCONS_00030052 lncRNA downstream 1134582 47438204 ~ 47448594 (+) True XLOC_014341
TCONS_00028449 mRNA upstream 1739 46240171 ~ 46257880 (+) False XLOC_014327
TCONS_00028448 mRNA upstream 20995 46237665 ~ 46238624 (+) True XLOC_014326
TCONS_00028446 mRNA upstream 20997 46222428 ~ 46238622 (+) False XLOC_014326
TCONS_00028447 mRNA upstream 20997 46222918 ~ 46238622 (+) False XLOC_014326
TCONS_00028444 mRNA upstream 48715 46158078 ~ 46210904 (+) False XLOC_014324
TCONS_00028452 mRNA downstream 5931 46309553 ~ 46333810 (+) True XLOC_014328
TCONS_00028453 mRNA downstream 39763 46343385 ~ 46362232 (+) False XLOC_014329
TCONS_00028454 mRNA downstream 39770 46343392 ~ 46359570 (+) True XLOC_014329
TCONS_00028455 mRNA downstream 68493 46372115 ~ 46411358 (+) True XLOC_014330
TCONS_00028456 mRNA downstream 521101 46824723 ~ 46825683 (+) True XLOC_014332
TCONS_00028436 other upstream 750638 45508865 ~ 45508981 (+) True XLOC_014316
TCONS_00028433 other upstream 2227455 44009473 ~ 44032164 (+) False XLOC_014312
TCONS_00028411 other upstream 2594108 43665391 ~ 43665511 (+) True XLOC_014295
TCONS_00028401 other upstream 2807672 43439401 ~ 43451947 (+) False XLOC_014288
TCONS_00028380 other upstream 3178559 43080925 ~ 43081060 (+) True XLOC_014280
TCONS_00028459 other downstream 995544 47299166 ~ 47309383 (+) False XLOC_014336
TCONS_00028462 other downstream 1003001 47306623 ~ 47306738 (+) True XLOC_014337
TCONS_00028470 other downstream 1270993 47574615 ~ 47574823 (+) True XLOC_014344
TCONS_00028474 other downstream 1714384 48018006 ~ 48018346 (+) True XLOC_014351
TCONS_00028479 other downstream 1715184 48018806 ~ 48023408 (+) False XLOC_014352

Expression Profile

//

Homologous

species RNA id representative length rna type GC content exon number chromosome id location
grasscarp (Ctenopharyngodon idella) CI01000096_00282562_00289289.mRNA True 1673 mRNA 0.48 5 CI01000096 282259 ~ 289702 (+)
bowfin (Amia calva) AMCG00021878 True 1739 mRNA 0.46 7 CM030130.1 34766852 ~ 34784712 (-)