RNA id: TCONS_00028467


Basic Information

Item Value
RNA id TCONS_00028467
length 932
lncRNA type retained_intron
GC content 0.44
exon number 2
gene id XLOC_014340
representative True

Chromosome Information

Item Value
chromosome id NC_007130.7
NCBI id CM002903.2
chromosome length 48449771
location 47394270 ~ 47423628 (+)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

tttaggatcagcagataataccttgacttctagttgttgatttggtgtcagaagtgtctctatgaaaggtgaaggcctctagattttgctgatttgagctcaataaatctgatcatgtcttgatgttgactgatttgatgaggacagtgcgctctgactctgctcagactaaagtgtcatcactgaacagaaataatgtccagtatagaatataaagtactgctgcagtggagacagaatgaatattgtgtctgactccatcatgagcttggaggactgcatccatacatctctgacatgactcacatcactgatgaataaagtcatctggaatgaagaagaaagcgttcagcaggatcccagagttcatcaagattcaacTTCAGCACCTCCATCATCTTACCctagatatgctcaataatgttcatgtctggtgactgggctggccaatcctggagcagcttgaccttctctgctttcaggagctttgatgtggaggctgaagtatgagcaggagcgctatcctgctggagaattgtccctctcctgtggtttgtaatgtaatgggcagcacaaatgtcttgatacctcaggctgttgatgttgatcatcacTGAAATGCGTTCTCTGTGAATGAGCCCTAATGCAGGTTTTAATTGATTGAATCTTCTCATTTCATCATTTCATTAACCTTTGTGGTGTTTCTCTCAGATCTGACCCGTGAGGAGGCTGTGGATCTGCTCAAGAAGTGTTTAGAGGAgCTCAACAAGCGCTTCATTCTGAATCTTCCTTCGTTCACCGTTCGTCTGATCGATAAAGACGGCATTCACGACATGGAGAAGCTTCCTGTGGGCCGCAAATGAGCCGCTGCTGTTTTTCACTCTCTTTTGTACTAAAATAACCCTCTGTGCTCTAATAAAAACGTTGACCCC

Function

GO:

id name namespace
GO:0010498 proteasomal protein catabolic process biological_process
GO:0010499 proteasomal ubiquitin-independent protein catabolic process biological_process
GO:0006508 proteolysis biological_process
GO:0043161 proteasome-mediated ubiquitin-dependent protein catabolic process biological_process
GO:0051603 proteolysis involved in cellular protein catabolic process biological_process
GO:0005839 proteasome core complex cellular_component
GO:0005634 nucleus cellular_component
GO:0000502 proteasome complex cellular_component
GO:0005737 cytoplasm cellular_component
GO:0004175 endopeptidase activity molecular_function
GO:0016787 hydrolase activity molecular_function
GO:0004298 threonine-type endopeptidase activity molecular_function
GO:0008233 peptidase activity molecular_function

KEGG:

id description
ko03050 Proteasome
ko05010 Alzheimer disease
ko05012 Parkinson disease
ko05014 Amyotrophic lateral sclerosis
ko05016 Huntington disease
ko05017 Spinocerebellar ataxia
ko05020 Prion disease
ko05022 Pathways of neurodegeneration - multiple diseases
ko01002 Peptidases and inhibitors
ko03051 Proteasome

ZFIN:

id description
ZDB-GENE-040718-353 Predicted to enable peptidase activity. Predicted to be involved in proteasomal protein catabolic process. Predicted to act upstream of or within proteolysis involved in cellular protein catabolic process. Predicted to be located in cytoplasm. Predicted to be part of proteasome core complex, beta-subunit complex. Predicted to be active in cytosol and nucleus. Orthologous to human PSMB2 (proteasome 20S subunit beta 2).

Ensembl:

ensembl_id ENSDART00000159808

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00030051 lncRNA upstream 82903 47337582 ~ 47338157 (+) True XLOC_014339
TCONS_00030050 lncRNA upstream 229559 47188530 ~ 47191501 (+) True XLOC_014334
TCONS_00030049 lncRNA upstream 982925 46423091 ~ 46438135 (+) True XLOC_014331
TCONS_00030048 lncRNA upstream 1140129 46240507 ~ 46280931 (+) False XLOC_014327
TCONS_00029735 lncRNA upstream 1202020 46216335 ~ 46219040 (+) False XLOC_014325
TCONS_00030052 lncRNA downstream 14577 47438204 ~ 47448594 (+) True XLOC_014341
TCONS_00029737 lncRNA downstream 166402 47590029 ~ 47591236 (+) True XLOC_014345
TCONS_00029738 lncRNA downstream 359465 47783092 ~ 47784972 (+) False XLOC_014346
TCONS_00030053 lncRNA downstream 374262 47797889 ~ 47800811 (+) True XLOC_014347
TCONS_00028472 lncRNA downstream 414976 47838603 ~ 47843652 (+) True XLOC_014348
TCONS_00028464 mRNA upstream 84652 47311869 ~ 47336408 (+) True XLOC_014338
TCONS_00028463 mRNA upstream 85058 47311020 ~ 47336002 (+) False XLOC_014338
TCONS_00028460 mRNA upstream 111834 47299212 ~ 47309226 (+) False XLOC_014336
TCONS_00028461 mRNA upstream 111834 47301893 ~ 47309226 (+) True XLOC_014336
TCONS_00028458 mRNA upstream 122403 47290287 ~ 47298657 (+) True XLOC_014335
TCONS_00028468 mRNA downstream 53281 47476908 ~ 47481618 (+) True XLOC_014342
TCONS_00028469 mRNA downstream 78954 47502581 ~ 47523302 (+) True XLOC_014343
TCONS_00028471 mRNA downstream 359510 47783137 ~ 47787275 (+) True XLOC_014346
TCONS_00028475 mRNA downstream 594837 48018464 ~ 48023442 (+) False XLOC_014352
TCONS_00028476 mRNA downstream 594842 48018469 ~ 48023271 (+) False XLOC_014352
TCONS_00028459 other upstream 111677 47299166 ~ 47309383 (+) False XLOC_014336
TCONS_00028462 other upstream 114322 47306623 ~ 47306738 (+) True XLOC_014337
TCONS_00028450 other upstream 1140129 46243620 ~ 46280931 (+) False XLOC_014327
TCONS_00028436 other upstream 1912079 45508865 ~ 45508981 (+) True XLOC_014316
TCONS_00028433 other upstream 3388896 44009473 ~ 44032164 (+) False XLOC_014312
TCONS_00028470 other downstream 150988 47574615 ~ 47574823 (+) True XLOC_014344
TCONS_00028474 other downstream 594379 48018006 ~ 48018346 (+) True XLOC_014351
TCONS_00028479 other downstream 595179 48018806 ~ 48023408 (+) False XLOC_014352
TCONS_00028484 other downstream 609672 48033299 ~ 48033440 (+) True XLOC_014354

Expression Profile

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