RNA id: TU223734


Basic Information

Item Value
RNA id TU223734
length 2873
lncRNA type read_through
GC content 0.52
exon number 2
gene id G197655
representative True

Chromosome Information

Item Value
chromosome id NC_048566.1
NCBI id CM023220.2
chromosome length 103806877
location 86412664 ~ 86458968 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

gtacaaaaccaaaagtaaaagatgcaaaaacgaaacttaagaatgggaagcatagaataacgcacatagaacagatatacAGCTTCTTAGACTGACGTTCAAtgagaaagaaatgtgtgttgtaGATCTTTCAATGTGAAAAAAGTAACATATTGCAGTGGTGCAAAGAGCTTTCAGGAGTCCCAGTGCCATGAAGAGTAACCAATTACTGGGAGGTCTGTGCTTCTGCCAGTGACAAATAACATTGTGTTCAGACCTACAGAACAGTGCACAGAATGATTTAGTCTCTGACAGTAGTGAGATCAGAGTTTGGAGCATGTTTATCCCAATGGAAAAGCATACCATTAACCCTTTCTAGTGTACAGTTCCACTGCCACACTGACCATGGgcattacatttaaaaaaccATGAGACAATGATTCCCATGCTAAGAGGCACAATGGCCATGCTGCACTTTCTCAGttctgcccacaaattttctatgggattgaggtcagggctttgtgatggccactccaataccttgactttgttgtcctttagctattttgccacaactttggacattgttcttctggaagacccaattgtgatcaagctttaacttcccgactgatgtcttgatgttgcttcattatatccacataattttcctccctcatgatgccgtctattttatgaagtgcaccagtcccttctgcagcaaaacacccccacaacatgatgctgccacacccgtgcttcacggttgggatggtgttcttcggcttgcaagcctccccctttttcctccaaacatactgatggtcattatggcccaacagttctatttttgtatcatcagaccagaggacagttctccaaaaagtacaatctttgtccccatgtgcagttgcaaaccgtagtcttcttccttgctgagcggcctttcaggttatgtcgatataggactcgtttcactgtggatatagatacttttgtacccgtttcctccagcatcttcacaaggtcctttgctgttgttctggggttgatttgcacttttcacaccaaagaacgttcatctctaggagacagaacgcgtctccttcctgagcggtatgccgGCTGCGTGttgccatggtgtttatacttgcatactattgtttgtacagttgaatgtggtaccttctggtatttggaaattgctcccaaggatgagccagacttgtggaggtctacaatgttttttctgaggtcttggctgatttcttttgattttcccatgatgtcaagcaatgaggcactgagtttgaatgtagtcCTTGAAAAACATcaacaagtacacctccaattgactcaaatgatgtcaattagcctatccaaagcttctaaagccatgacatcattttctggaattttccaagctgtttaaaggcacagtcaaattagtgtatgtaaacttctgacccactggaattgtgatacagtgaaataatctgtctgtaaacaattgttggaaaaattacttgtgtcatgcacaaagtagatgtcctaaccgtcttgccaaaactatagtttgttaacaagaaatttgtaaaattgttgaaaaacaagttttaatgactccaacctaagtgtttgtaaacttccgacttcaactatatattagAGCCAGAATACAGTGATACGGTGTGTCTGAGATtctagtatatacagtacatgatatCAAATTTGAATGGACGCgaacacatattttgcagatgtatTCGAAGATGCAGTAATATACTTATGTTTCTAGCAGTGCGGTATTCTGAGGACCAGCGGGGGCTGGGGACATGACGTGTCCCTGCCTGGCccttttcacaactgtcttggtgtgtttggacaataaTAGTTTGTTgataatgtggacaccaaggaacttgaagctctcaacctgctccactacagccccgtcgatgagaatacactaacaatacaaaacaatacccacaaatccccaaaataataaaaaataatctgAACAAGCAATGTCAGTCTggaatatatatacactactgttcaaaagtttgaggtcacttagaaatgtccttgtttttgaaagaaaagcacattttatttCTCCATAAAAATAacttcaaattgatcagaaatacagtgtagacattgttaatgttgtaaatgactactgtagctggaaactgcatattttctatggaatatctacataggcgtacagaggcccattatcagcaaccatcactcctgtgttccaatggcacgttgtgttagctaatccaagtttatcattttaaaaggctaattgatcattagaaaacccttttgcaattatgttagcacagctgaaaactgttgtcttgactaaagaagcaataaaactggtcttctttagactagttgagtatctggagcatcagcatttgttggttcgattaccggctcaaaatggccagaaacaaataaccttcttctgaaattcgtcagtctattcttgttctgagaaatgaaggctattgccaagaaactgaagatctcatacaacgctatGTGGagaatatatttttctattttacAATCACCAAAATAATTTCCCTTAGAATGCCTTTGTTATACTTGTTCAGCAGCTCGAACCCAAAAATGATCATTCACAGGAATATTTTTTCTTTGTGTGAAATCACAACTTTGCAGTGTGATGCAGACAGAAATGGCATTATCTggaatctttttttttaaattttcaaGAAGGAAATGacacatttttttcactttcataagTCAATGttgggcaattccatggtaacagaatgatgctgagactcagattttccatttaaaatgtttgtcaaacaaaaaccaatgattgcaaaacc

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU223739 lncRNA downstream 51973 86357692 ~ 86360691 (-) True G197660
TU223852 lncRNA downstream 57680 86347892 ~ 86354984 (-) True G197768
TU223849 lncRNA downstream 96224 86316004 ~ 86316440 (-) True G197765
TU223826 lncRNA downstream 140601 86270818 ~ 86272063 (-) True G197746
TU223819 lncRNA downstream 153261 86258870 ~ 86259403 (-) True G197739
TU223904 lncRNA upstream 24713 86483681 ~ 86483970 (-) True G197808
TU223920 lncRNA upstream 45524 86504492 ~ 86504969 (-) True G197824
TU223931 lncRNA upstream 71574 86530542 ~ 86530878 (-) True G197835
TU223932 lncRNA upstream 74991 86533959 ~ 86534243 (-) True G197836
TU223933 lncRNA upstream 75393 86534361 ~ 86534589 (-) True G197837
XM_036934360.1 mRNA downstream 8509 86401369 ~ 86404155 (-) True LOC118936857
XM_036957794.1 mRNA downstream 220556 86141721 ~ 86192108 (-) False ccnd2a
XM_036957787.1 mRNA downstream 238684 86141721 ~ 86173980 (-) False ccnd2a
XM_036957797.1 mRNA downstream 245201 86141721 ~ 86167463 (-) False ccnd2a
XM_021575002.2 mRNA downstream 272837 86136691 ~ 86139827 (-) False tigara
XM_021575228.2 mRNA upstream 61054 86520022 ~ 86526769 (-) False setd6
XM_021575232.2 mRNA upstream 61054 86520022 ~ 86526770 (-) True setd6
XM_036957969.1 mRNA upstream 199046 86658014 ~ 86676222 (-) False LOC110498617
XM_036957942.1 mRNA upstream 199046 86658014 ~ 86676223 (-) False LOC110498617
XM_036957947.1 mRNA upstream 199046 86658014 ~ 86676223 (-) False LOC110498617
TU223618 other downstream 448999 85959845 ~ 85963665 (-) True G197554
TU223542 other downstream 569171 85836299 ~ 85843493 (-) False G197498
TU223547 other downstream 569171 85836299 ~ 85843493 (-) False G197498
TU223549 other downstream 569171 85836299 ~ 85843493 (-) True G197498
TU221798 other downstream 1772908 84609734 ~ 84639756 (-) True LOC110498022
TU224521 other upstream 444068 86903036 ~ 86903956 (-) True G198342
TU225173 other upstream 863171 87322139 ~ 87326469 (-) True G198912
TU228163 other upstream 3147869 89606837 ~ 89609890 (-) True LOC110499346
TU228979 other upstream 3918589 90377557 ~ 90441425 (-) True G202279
TU230773 other upstream 5130244 91589212 ~ 91591049 (-) True G203915

Expression Profile