RNA id: TU234622


Basic Information

Item Value
RNA id TU234622
length 1322
lncRNA type inter_gene
GC content 0.44
exon number 1
gene id G207283
representative True

Chromosome Information

Item Value
chromosome id NC_048566.1
NCBI id CM023220.2
chromosome length 103806877
location 95013936 ~ 95015257 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

tcacctggaaggcatttcaattaacaggtgtgccttgcgaaatgtctttccttaatgcatttgagccaatcagttgtgctgtgacaagttagggttggtaaacagaagatagccctatttggtcaaagaccaagtccttattatggcaagaacagctcagagaaacgacagtccattactttatgacatgaaggtcagtcaatacggaacatttcaagaactttgaaagtttcttcaagtgtattTGCAAATAAAACATTAAGCGCTATGAAAAAAAACTGCctctgccacaggaaaggaaggcccagagttaccaatgctgcagaggataagctcattagttaccagcctcagaaattgcagcccaaataaatgcttcagagttcaagaactgacacatctcaacatcaactgttcataggagactgtgtgaatcaggccttcatggttgaatttgtgcaaagaaaccactactaaaaggacaccaataagaggagacttgcttgggccaagaaacacatgcaatggacattagaccggcaTGAGGAGATAGGCAATAAATAGGAAATAGTAGCGAAGAATAACATGAGTGATAAATTAGCAGATGttgagatactggtgtgcaaaagaacagacaagtaaataaacagtatggggatgaggtaggtagaatgggtgggctatttacagctgcatcgatcggttagctgctcagacagctgatgtttaaagttagtgagtgaaatataagtctccagcttcagcgatttttgcaattcgttccagtcactggcagcagagaactggaaggaaagatggccaaatgaggtgttggcgttggggatgatcagtgagatatacctgctggaacgtgtgctacgggtgggtgttgttattgtgaccagtgagctgagaaaaggcggagcctttgtgagaagcagagtgtggttcccaccgtcaAACAGAGGTGTGATgttgctttgctggtaacactgtcagtgatttatttagaattcaaggcacacttaaccagcatggctaccacagaattctgcagcgatagcgcaaaccagatgggatggtgtatcatttgtttttcaacaggacaatgacccaacacacctccaggctgtgtaagggctatttgaccaagaaggagagtgatgggagtGCTGCATccgatgacttggcctccacaataacccgacctcaacccaattgagatggtttgggatgagttggaccacagagtgaaggaaaagcagccaataaatgctcagcattccaggtgaagctggttgagagaatgccaagagtgtaca

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU234827 lncRNA downstream 5750 95007980 ~ 95008186 (-) True G207454
TU234786 lncRNA downstream 92911 94920075 ~ 94921025 (-) False G207421
TU234788 lncRNA downstream 92911 94920075 ~ 94921025 (-) False G207421
TU234789 lncRNA downstream 92911 94920075 ~ 94921025 (-) True G207421
TU234626 lncRNA downstream 147581 94863530 ~ 94866355 (-) True G207287
TU234835 lncRNA upstream 5234 95020491 ~ 95020717 (-) True G207462
TU234844 lncRNA upstream 34627 95049884 ~ 95050507 (-) True G207471
TU234860 lncRNA upstream 65785 95081042 ~ 95081243 (-) True G207487
TU234863 lncRNA upstream 70631 95085888 ~ 95086181 (-) True G207490
TU234617 lncRNA upstream 79966 95095223 ~ 95095886 (-) True G207278
trnay-gua mRNA downstream 4245 95009602 ~ 95009691 (-) True trnay-gua
XM_036959842.1 mRNA downstream 39023 94959943 ~ 94974913 (-) True LOC110500345
XM_036959851.1 mRNA downstream 45796 94959918 ~ 94968140 (-) False LOC110500345
XR_005039105.1 mRNA downstream 232568 94777558 ~ 94781368 (-) True LOC110500320
XR_005039107.1 mRNA downstream 232570 94777558 ~ 94781366 (-) False LOC110500320
XM_021577703.2 mRNA upstream 418 95015675 ~ 95020429 (-) True LOC110500368
XM_036959906.1 mRNA upstream 82122 95097379 ~ 95124547 (-) True LOC110502417
LOC118944198 mRNA upstream 255836 95271093 ~ 95271272 (-) True LOC118944198
XM_021580524.2 mRNA upstream 613192 95628449 ~ 95631972 (-) False parietopsin
XM_036960040.1 mRNA upstream 620639 95635896 ~ 95664503 (-) True LOC110502485
TU234691 other downstream 237580 94762662 ~ 94776356 (-) True G207340
TU234581 other downstream 384197 94629437 ~ 94629739 (-) True G207249
TU234576 other downstream 396704 94616915 ~ 94617232 (-) True G207244
TU234014 other downstream 685753 94327910 ~ 94328183 (-) True G206750
TU234008 other downstream 700018 94313390 ~ 94313918 (-) True G206744
TU235317 other upstream 362466 95377723 ~ 95408714 (-) True G207858
TU235447 other upstream 508711 95523968 ~ 95524227 (-) True G207959
TU235358 other upstream 588971 95604228 ~ 95609786 (-) True G207884
TU235350 other upstream 666780 95682037 ~ 95686864 (-) False G207876
TU235346 other upstream 667366 95682623 ~ 95686864 (-) True G207876

Expression Profile