RNA id: TU234617


Basic Information

Item Value
RNA id TU234617
length 664
lncRNA type inter_gene
GC content 0.33
exon number 1
gene id G207278
representative True

Chromosome Information

Item Value
chromosome id NC_048566.1
NCBI id CM023220.2
chromosome length 103806877
location 95095223 ~ 95095886 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

tgtgaggggtgtactcacttttgtgatatactgtaaatCGGGGTCACGTTCATTGGATGCCATAACACGGATCTATTCACCACATGCAAATTCCACTCCGGTTATGTCCCTTTAAtaacgtttcttattggacaagtctagGTAGTCCTTCTGTGTTTCCGTGCGTTCTCTTtcagtttggtgcctaatgaacacgatcCCTGAAATATGTCCTCGACTGACGATGACATTTATGCAACGTtatttattgtgatgtcattttaaGTTGCTTGAATCCTACCTTTCAAGTGTTTTAGCAAGAGACCGTTAATGATTACTTACCACGTGCATTAATATAAGTATTATTTCAAAGGATCAAGCCAATAAATAAGGgcaaataaaaaacaagaaatatAATCGTCATTTTCTTTATTATACTTACCTGATTCCTGTATTGTTTATTTAGAATGAAATTAAATATGCAAAAATGACTGCCTGTGTTTTGGGTGGGCACCTCCAATGTATTATTTAATCATTCAAAGCATATTCAATGCCTTGAAAATAACCTGTGATATGACTATAATAATGCTAtgaaattatttatatttctatattttgttTCTCTGTCCCTATTTATTTTgaggtgatttaaaaaaaataaattgaaTTGTTGCACATCTTTAAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU234863 lncRNA downstream 9042 95085888 ~ 95086181 (-) True G207490
TU234860 lncRNA downstream 13980 95081042 ~ 95081243 (-) True G207487
TU234844 lncRNA downstream 44716 95049884 ~ 95050507 (-) True G207471
TU234835 lncRNA downstream 74506 95020491 ~ 95020717 (-) True G207462
TU234622 lncRNA downstream 79966 95013936 ~ 95015257 (-) True G207283
TU234872 lncRNA upstream 16879 95112765 ~ 95113514 (-) True G207499
TU234876 lncRNA upstream 23369 95119255 ~ 95120034 (-) True G207503
TU234890 lncRNA upstream 46055 95141941 ~ 95142815 (-) True G207517
TU234892 lncRNA upstream 51604 95147490 ~ 95147876 (-) True G207519
TU234898 lncRNA upstream 58312 95154198 ~ 95200654 (-) True G207524
XM_021577703.2 mRNA downstream 74794 95015675 ~ 95020429 (-) True LOC110500368
trnay-gua mRNA downstream 85532 95009602 ~ 95009691 (-) True trnay-gua
XM_036959842.1 mRNA downstream 120310 94959943 ~ 94974913 (-) True LOC110500345
XM_036959851.1 mRNA downstream 127083 94959918 ~ 94968140 (-) False LOC110500345
XR_005039105.1 mRNA downstream 313855 94777558 ~ 94781368 (-) True LOC110500320
XM_036959906.1 mRNA upstream 1493 95097379 ~ 95124547 (-) True LOC110502417
LOC118944198 mRNA upstream 175207 95271093 ~ 95271272 (-) True LOC118944198
XM_021580524.2 mRNA upstream 532563 95628449 ~ 95631972 (-) False parietopsin
XM_036960040.1 mRNA upstream 540010 95635896 ~ 95664503 (-) True LOC110502485
XM_021577854.2 mRNA upstream 607473 95703359 ~ 95721115 (-) True LOC110500466
TU234691 other downstream 318867 94762662 ~ 94776356 (-) True G207340
TU234581 other downstream 465484 94629437 ~ 94629739 (-) True G207249
TU234576 other downstream 477991 94616915 ~ 94617232 (-) True G207244
TU234014 other downstream 767040 94327910 ~ 94328183 (-) True G206750
TU234008 other downstream 781305 94313390 ~ 94313918 (-) True G206744
TU235317 other upstream 281837 95377723 ~ 95408714 (-) True G207858
TU235447 other upstream 428082 95523968 ~ 95524227 (-) True G207959
TU235358 other upstream 508342 95604228 ~ 95609786 (-) True G207884
TU235350 other upstream 586151 95682037 ~ 95686864 (-) False G207876
TU235346 other upstream 586737 95682623 ~ 95686864 (-) True G207876

Expression Profile