RNA id: TU241755



Basic Information


Item Value
RNA id TU241755
length 282
lncRNA type inter_gene
GC content 0.35
exon number 1
gene id G212871
representative True

Chromosome Information


Item Value
chromosome id NC_048566.1
NCBI id CM023220.2
chromosome length 103806877
location 101835510 ~ 101835791 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence


aaaaagtatttagtcagccaccaattgtgcaagttctcccacttaaaaatatgagagaggcctgtaattttcatcataggtacacttcaactatgacagacaaaatgagaaaaaaaatccagaaaatcacgttgtaggatttttaatgaatttatttgcaaattatggtggaaaataaatatttggtcacctacaaacaagcaagatttctggctctcacagacctgtaacttctttaagagactcctctgtcctccactcgttacctgtattaatggcacc

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU241745 lncRNA downstream 88959 101743062 ~ 101746551 (-) False LOC110517830
TU241722 lncRNA downstream 98853 101733680 ~ 101736657 (-) True G212857
TU241723 lncRNA downstream 100714 101731089 ~ 101734796 (-) True G212858
TU241719 lncRNA downstream 103296 101728671 ~ 101732214 (-) True G212856
TU241709 lncRNA downstream 107739 101727565 ~ 101727771 (-) True G212849
TU241757 lncRNA upstream 1637 101837428 ~ 101837741 (-) True G212873
TU241777 lncRNA upstream 18064 101853855 ~ 101854076 (-) True G212892
TU241780 lncRNA upstream 19842 101855633 ~ 101855890 (-) True G212895
TU241794 lncRNA upstream 24848 101860639 ~ 101878112 (-) True G212908
TU242215 lncRNA upstream 56484 101892275 ~ 101892674 (-) True G213260
XM_021595701.2 mRNA downstream 88963 101745268 ~ 101746547 (-) False LOC110517830
XR_005039310.1 mRNA downstream 128863 101706005 ~ 101706647 (-) True LOC118944015
XR_005039305.1 mRNA downstream 131550 101701386 ~ 101703960 (-) False LOC118944014
XR_005039306.1 mRNA downstream 131550 101701386 ~ 101703960 (-) False LOC118944014
XR_005039307.1 mRNA downstream 131550 101701386 ~ 101703960 (-) True LOC118944014
XM_021578959.2 mRNA upstream 77193 101912984 ~ 101916443 (-) True LOC110501407
XM_021578971.2 mRNA upstream 162008 101997799 ~ 102000087 (-) True LOC110501416
XR_005039316.1 mRNA upstream 452104 102287895 ~ 102292186 (-) False commd4
XM_021579008.2 mRNA upstream 452104 102287895 ~ 102292356 (-) False commd4
XR_005039315.1 mRNA upstream 452104 102287895 ~ 102292356 (-) True commd4
TU241748 other downstream 88959 101743015 ~ 101746551 (-) False LOC110517830
TU241746 other downstream 88959 101743062 ~ 101746551 (-) False LOC110517830
TU241747 other downstream 88959 101743062 ~ 101746551 (-) False LOC110517830
TU241749 other downstream 88959 101743062 ~ 101746551 (-) True LOC110517830
TU241693 other downstream 115778 101719367 ~ 101719732 (-) True G212836
TU242469 other upstream 550338 102386129 ~ 102387513 (-) False G213475
TU242474 other upstream 550338 102386129 ~ 102387513 (-) False G213475
TU242475 other upstream 693761 102529552 ~ 102531226 (-) False G213475
TU243229 other upstream 983577 102819368 ~ 102819829 (-) True G214030
TU243238 other upstream 1008230 102844021 ~ 102847527 (-) True G214038

Expression Profile