RNA id: XM_036968114.1


Basic Information

Item Value
RNA id XM_036968114.1
length 6332
RNA type mRNA
GC content 0.49
exon number 17
gene id LOC110508538
representative False

Chromosome Information

Item Value
chromosome id NC_048567.1
NCBI id CM023221.2
chromosome length 85311031
location 9233449 ~ 9333337 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

GTATCGCTCTTTTCTCCCCTTCAGGCCCCCCGGCTGCCAGACGTCACACCAGTTTAAAACAAGGACAAAAAAAGTTGTCGGGTGAACGAGAGAAAAAAAACTCTGAAACCCTTCCCCGATCCGAATCCAGggaggagtgagtgagtgtgacagAACGAgggggaccgagagagagagagcacgcgaAGGAACCTTCTCTCACAGCCACACAGAAGACAGTGGGTGTTCTGACTATCACCGAAAGGAACTGATAATAACTCACCCCGGGAGTCAACGAAAACACATATACGGTGGTCAGAAAGTCGTTACCGGAGGGGAAATACTTCAGGGCGAGGCCACGGAGAGAATGCGTCTCAGGTTTCTGTACAGGATTTATGCCCTGTGTTGTTTTGTGGCAGTCAcatcctctctgaccaaggctGAGAAGAAAAAGGCGACGGGCAGAAGATCCCGGCAGGTGGACAATAGTCCGGAGGGGTTGTGGTCTGCCTGGGAGGAGTGGTCAGGATGTTCTCAGAGCTGTGGAGTGGGCGTGTCACAGAGAACCAGAAAGTGTGAAGCCCCTCCCCGTTCTCtaactcctcccctctcccactctcttccaAACTGGGGGGGTTCATCGTTCCTCCCAGGGAGGGCCGGGGGTCCCAACCATGGCTCTGTCATCTCCGCCATCCGCCCCTTCTACTCCCCTCATTACTCTAGGAACCAGCCATCCCAGTAcgggggaggaggtgggggagggacagagagacagccagaccCCTTCTATCCCCCCTCACTCCCATCATCCAATCAGAACCCAGGACTGTCTCTCTATCGGGACACTCCTATAGGAGGAGGGGCAGGAGCTGTGCCAGCGCAGTCCTCCAATCCCACGTCTCCCCTCTATCGCCCGGAATTCTCATCACCCAATCAGGGACCAGGTTCTGTTTACCGTTCCCCCTCATTTCCTGCCCCCCCATCCAGCTACAGCCAACCAGCACATGCCGCCCGCCAGCCAGCCAATCCTGGAAcagggagggtgggaggaagtGGGAGCAGAAGGTCAGTGTTGCCCAATAGGGGGGCTCTGCCTGCTAGTAGgtcctcTTCTATCCGTCCGGGTCAGTTTGGTTACGGCAGGGTTCCCTTCTCTCTGCCATTACACCGGCAAAACCGGCAGGCCCGCCACACTGAGCACGGCAATGCTACCATAACAACCCTGGTACTAGAGACCGAGGGGCAGGAGGGAACTATTGTTAACATTGACCAAATGGACAGACccggagaaggagaagagaagaggaggggagagaaggagagggagggaggcaagaaCCACGAAGggaataggggagagagggagcatgagaggagagaggaggagaggaagacagagggggagagtaCGGAGTCACCTGTTGCTAAGGCATTGCTAACAACAACCATAGCTAAACCAGAAAGGAATGGACAGAGGGACATTGACActcacagacagacggacagaccgaGACAAGCTGCTgcagagcgagggagggagagagggagagaaagagagagagtgcccTCGACCCTCCCTCACTCACACAGGCCATCTCCCTTCCAGCCCAACCACGACAGAATCATTGATAGACgcgcccctcctcccctcccccctctgcctcactcctaccccccccctctctctcacccctactCACCCCCTCTCCACCGCTCCTCCCccgagcacagagagagagatgggttcaACCCTCAGCTCCAATCCCCTCACCCTAGACCCCCCCAACCCAACATCTACCCCCTACAACAACAGCAGCACCCCCACCCCCTGGccgagggggagacagggggacagagattaCCCCCCCAGAACTACAGGTGTTCGGGAGCAGAGAATGAGTATCGTCGGTGCTTCTCCCAGgtATGTGTAGGAGGTGCAGACTCCAGAGCAGAGCAGTGCGCTTCCTACAACAACCAGGAGTTTATGGGCAGACTGTACGACTGGGAACCTTTCACTCAGGttgGGGTGGAAAAGCAGTGTGAGCTGACGTGTAGGCCGGTTGGATATCGCTTCTACGTGAGTCaggcagacagagtgagagatggaACACCCTGCGTTAACACCAGCACCAATGACGTGTGTGTGGCCGGGCGCTGCCTGactGAGGGCTGTGATGGGGTGTTGGGGTCTGGCTTGGTGATTGACAGGTGTGGTCAGTGTGGGGGGCGGGACCTGTCCTGTCAGAAGCTGAGCGGGAGCTTCCAGAACACCAGTGTTCCCCTTGGTTACCACAGAATTCTGGACATCCCCCCAGGAGCTACTGCCAtcaacatcacagagagacacgcCAGCTCCAACTACCTGGccctACGTAGTGGTACAGGTGTATCAGTAGTGAATGGGCGCTGGGCGGTGGATCCTCCAGGAGACTACGAGGCAGGGGGGACTACCTTCACCTACACCCGCCCCAGGGCTCTCTCTGATGggcaggaggacagaggagagacccTTAGAGCTCCAGGACCCACCACCACACAACTGACTCTATATATCATCTTCCATAGGCAGAATCCAGGGATCGACTATGAATTCTACATCCCAACAGAAAAGaaagtggaagagagggagaggccgcgagagagagaaagagagaggcctagagagagagaagtagagcgGGAACGACCGAGGGCACCCCTGAGAGACACTAgttCTCTCATTGTAACAGTGGAAGACCCTatccctcctccccccatctcctcttcgtcctcttccttctcctcctcttcttccgcaGACAGATGGACAGCTGAGAGCTCCCGCACCCGAGGCTCGGTACCCAATCGGAATGTTCGAATCCCACCTCGTACTGACCTGCCCCTCGACACCCAGTCACCCTTCGTATGGAGGAGGGGCGGGCTCACTGAGTGTACTGCTTCCTGTGGCAAAGGGTCCCAGTACAGGGTGATCCTGTGTATTAACCGCCATACTGACGAGGAAGTCCCAGACAGGAAGTGTGACTCAGCAGCAAGACCCTCCCTTGAAGAGGAGCCCTGCAACACACACCCCTGCCCAGCATTcttCGAGGCCAGCTCATGGTCAGAGTGCAGTGTGTCTTGTGGTATGGGAGTACAGCAGAGACAGCTTCAGTGCAGACAGAGCTTTGGGAACCGTTCCACCATGGTTCAACCACAACGCTGCTCCAACCTAACCCCACCTGACCTCACCCAGTCCTGCCAGCTACGACTCTGCTCACACTGGGAGATAGGCACCGACTGGAGCTCTTGCTCAGTGGACTGTGGCATGGGGAAGAGAACTCGTAATGTCCGCTGTGTCAGTGACCATGGCAGCGTGGTGAATGACAAGGAGTGTAACGCCAGGCTCCGCCCACAAGGAAGTGAGGACTGTCACATGGGGCCCTGTGTAACCAACTGGTACTTCACTGTCTGGTCCAACACTtgttcaGCCCCGTGTGGTCCAGGTGTTCAGAGGAGAGAGGTGTTGTGTCTGACccgtggagggagagagggaggagagtgttTGGGGGACAAACCGGCGGACATGAAGGCGTGTAACGGGGGTCCGTGTGCTCCCACCTACATGTGGTACAGTAGCCCCTGGGGTCAGtGTAGTGCTCCATGTGGGAATGGAACTCAGCGAAGGGACATCATCTGTGTGGAGAAGATGGGGACAGATTTCAAAGTGGCACCGATCAGCCAGTGTGCCCAGCTGGAAAAGCCTCCCTCGGTGCAGACGTGTGCGATGGAAGCATGTCAGCCTCAGTGGTTTACTACGGAGTGGAGCgcgtgctcTCGTTCCTGTGGTAAGGGGCTACAGATCAGAGAAGTACGGTGTCTCACACCTGACAAACAGCACAGCCCAGAATGCTCCCTTACAGACAAACCTGACCAGGAGCAGCTCTGCAATACCATACCCTGCAGTCCACAGgtcgcagatGTGAACTGCAGGGACCTGCGTCATAACTGTGTGATGGTGGTTCAGGCCAGACTGTGTGTCTACTCCTACTACAAGACTGCCTGCTGCGCCTCATGTACCCAGAGTGCTCAGCGGGCCAAGAGGCACTGACCAGCCAATAACAGGCTTCCAGCCGAGATCAGCCAGGGGTCAGGGtttcaggggttagaggtcaaagTGCAGGTTACCATAGAAATGATCAGACCATAGAAATGGAGTGGATATATTACCACATAAAGTGGTGATTTAATTGTGTTCTGGGCCAGATGTACAGCCGTTATAGAGGGGATGTTTTGAAATGTGAGTTAATTTGTTACTAACTACATTTCTTACATTTTGTGGATTATTAGCAGATGCAAATAATGTGCCAATGACATTGTACAGAGCTCCATAATATGGAACATATCTGATTTCTATGTCCACTCTTTCTGTTTCTATGGCTGAGagatgctgtggatgatgtatgTACACCCAGGACCTGGGTCCAGAGCTCTGTCCCAGTAGCCAAACTTGCATACCACTTAGTGTGAGGTAAAGTATTGTCCATGCTAGTATGGATATATGGGACCCAGAAGGTATAACCCAATAGCAGTGTAAAACCTGCTGGAAGTTTCTATGATGTATGTTTTCTATGTTTGTGTTCTATATGCCAAAAAACTATTTTAAATGTCTCCTCAGTGTTTATACAGCATCATCAACATTTGGTGAAAACATATCAAAATGTAAAATGGTGGCCTAGTACAAGTGACCTGTTTTTAAAGGACATTAGTGGAGAGATGTCCATAACCTGAGAACGCCCCCAATCTGAAAACAAGCAGGGGTAGAATGAAACGACTGTATGGTCTATTGGTGACTGTCCAGGTATCCAACCTGTGCCCTCACGACTGTTAGCCCACTGAACTAAAGCCAAGGCATTACCCCTGAGAGCTAATACCAGTATTCAGGCCTCAGCCAAGGTTACACCCAACCACCTCTGCTACATACAGAAAATATACCACTACCTGAGACATTTGTATCATCTGACCCATCAATATGTTCAAGAATGGCAGGTATTGAAATAACATTGTATTCATTTATGTATTCATTTTCAGAAATGCATTTGCCACAATATGCTGAAGAGCAAGCTGTGTCTGAAAGGTCCAattcagctgtttttatctcaatatcaaatcctttctgggtaacaatgaagtacccTACTGTGActgttttcaattcaaatggtcaaaaacaaacaaaattacttcttagcaaagagacatttctcaagcaagaatttagctatgAAACTGAAAACTACtgtagctgttattggcagagaggtttgaaactaTTTCTCTTTTTGGTCTCTTAACtaactggtgatgtcaccatgcagACCAAAActtcatcccaccaaaacagggagaactttcaggcggtcttttcaaacagctcttatactaaaatggcattatcatcattttcacaatttcacagtattattccaaactcATAGTTTGGAAGGATATATGAAACAcagaaaatcacgtttttgagtgcactgggcctttaacttcCAAAGGAGCAAGTAACACTCCCTGACTAATTTGTGTTTTTACTGAAAATGTTTAAAAAGGTTCTGTCTTGGACTTAAACAAAGCTCTTTTTAACAGATATTGCCCCTATGCCTTGACATAGTTGTAACATGTTACATCTACAGCAtacagacacacggacacacacacacacacactccacaggtGAACGATGTGTATATTTGTCAGTCAATATTATATTTGTATGTCTATATTTCTGTGTGAACATATACTTAATATACATATACATAAATATATCCTATATTGTGGTATGATTTGAATTTTAGGCATACTGTACATGTTAACTGTATGCATATATTCATATAAAGTATTCATATTTTTCAGTCATCATATTAAGAAGAACAAATTATATTTTGCTACCCTTggatggtgtgtgttgtgtgtctgtgtgtctgtatgtttgtcttcctgtctctgtgAAGTTGCCTatttgtgtttatttgtgtgaGTATGCAGCCGTGGGTGTATTCTTGTATGAGTCTTATCTGTGAATATAATTTTAATGTTTTAAAACGTTTTTAGtagaaacaaaaaaatatatattaaaaagtcTGAAAAAAGGATAGTAATTTATCTAttataaaaaatacatgtaatttattttttttcttaagAGGAGCTGTAGCAAATTCCCTTTGTTGCTACCGTGTCAGAGTTTATGATCAGAAGTTATTGCGTAGAAGTAAATGGATTTTGTATTATTTTGAAAAAGGCAAACGAGTGTGTGGAAAATGCTATCACAAACTTAATttgaaataaaaactgaaaccAGAAAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU254112 lncRNA downstream 3122 9229444 ~ 9230327 (-) True G222500
TU254109 lncRNA downstream 5946 9227241 ~ 9227503 (-) True G222498
TU254093 lncRNA downstream 14081 9176876 ~ 9219368 (-) True G222482
TU254042 lncRNA downstream 69712 9162159 ~ 9163737 (-) True G222437
TU254013 lncRNA downstream 112120 9118840 ~ 9121329 (-) False G222423
TU254119 lncRNA upstream 13857 9347194 ~ 9348772 (-) True LOC110520816
TU254200 lncRNA upstream 68286 9401623 ~ 9401866 (-) True G222573
TU254201 lncRNA upstream 68800 9402137 ~ 9402559 (-) True G222574
TU254203 lncRNA upstream 71330 9404667 ~ 9404887 (-) True G222576
TU254206 lncRNA upstream 73039 9406376 ~ 9406682 (-) True G222579
XM_036968106.1 mRNA downstream 1491 9160983 ~ 9231958 (-) False LOC110508553
XR_005040485.1 mRNA downstream 1491 9160983 ~ 9231958 (-) True LOC110508553
XM_036968098.1 mRNA downstream 1492 9160983 ~ 9231957 (-) False LOC110508553
XM_036968109.1 mRNA downstream 10501 9160983 ~ 9222948 (-) False LOC110508553
XM_036968081.1 mRNA downstream 82458 9122297 ~ 9150991 (-) True LOC110500119
XM_036968149.1 mRNA upstream 13814 9347151 ~ 9371934 (-) False LOC110520816
XR_005040494.1 mRNA upstream 43162 9376499 ~ 9390272 (-) False rprd2b
XM_021589148.2 mRNA upstream 43163 9376500 ~ 9390272 (-) False rprd2b
XM_021589157.2 mRNA upstream 43163 9376500 ~ 9390272 (-) False rprd2b
XM_021589164.2 mRNA upstream 43163 9376500 ~ 9390272 (-) True rprd2b
TU254025 other downstream 115076 9110973 ~ 9118373 (-) True LOC110501040
TU254075 other downstream 138233 9093876 ~ 9095216 (-) True G222465
TU254073 other downstream 138313 9093180 ~ 9095136 (-) False G222465
TU253486 other downstream 284262 8938896 ~ 8949187 (-) True G222023
TU253489 other downstream 311860 8912435 ~ 8921589 (-) False G222023
TU254242 other upstream 161459 9494796 ~ 9496853 (-) False G222607
TU254262 other upstream 197837 9531174 ~ 9551240 (-) True LOC110508584
TU254285 other upstream 228408 9561745 ~ 9562965 (-) True LOC110520821
TU254309 other upstream 284288 9617625 ~ 9622934 (-) False G222662
TU254332 other upstream 339106 9672443 ~ 9673439 (-) True LOC118944443

Expression Profile