RNA id: XM_036975393.1


Basic Information

Item Value
RNA id XM_036975393.1
length 4561
RNA type mRNA
GC content 0.51
exon number 4
gene id si:dkey-79d12.4
representative False

Chromosome Information

Item Value
chromosome id NC_048567.1
NCBI id CM023221.2
chromosome length 85311031
location 14270653 ~ 14279142 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

CCGGCAACAGAAATGCCAATGGCGGACTCGAAAAACATACGTGTTTGTAGTGTCCCGCAGTGCTCAAATTCCAAACAAAAACAGTCATATATCCCCCGAGCATTGATGAATTGAAGAAGAAGTGGGGGCATGCAATTAGAAGAGACGTCGAGGAAGCACATTCTGTATATATGCAACTTACACTTCAACCCTGGCGACTTCGTCAGACCGCAAGGGTCTGAAGCCGGGGGCtgttcctagacgtttccaatGGAACGACTATCATCCCGCAACAACGCGGGAATCTGGATATGAAAGGGCAAAAGCTCGTCTTGGAGTTGATGTTTGAGAAACCGAGAACCAGGAGCCGGACACTTAACTGTGACCACGACTATACGAAACCTCCTCTTGGGAGCCAGTATACGGTTGCTATGGAGATCGCTCCGGAAGACGTAGTGATTCAGGAGACCTTGGGGGCAGAGGTGGAGCTACTGGAGGACGTGATCAAAACCAAGAAACAGAGCCCACCGGACAGGGAACCCTCTGAAAATCTCAGTTTTATTTCTACACCTGTACACTTGGAGATCCCCAGGTTTTCTGTGCCACGCCCGTTCTCCATGCCAGAGGACTCGAGTGACGATGACTGTGACCTGTCAGGGGACAGCATCTCTGCTTACGGCATGCATTCCATGGAGCTGGGGGGAAAGTGCTGGGAATGTGGCGTGCAATTCAAGCCTGGCCAGGAGTTGATCGAACACTTTGAGAGCCACAGGTCCAAGGTCTCAACATCCTGCAACATCTGTCGGGTGACTTTCAGTCGCACAGTATCACTGGCTATGCACCTAGTCAACGCACACACAAACTCAGTCCTCCATTGCAGCAACTGCCAGCTGCATTTCAGCAACTTGTGGGATCTCAACAAGCACATAGGAATACACTTGTTCACTGAGTTGTTAAATACACCCCTTGGGGACATCTCAAATAATGTCTTGAATAGCAGTGAAGAGACTTTAAAGGGACAGTATACTCTACCTTCAGCCTTGGCcctcaaacatgatgacaactcAAATGATTGCTTGAATGGAAGTGAGGAGACTTTAAAGGGACAGCATACTGTTCCTTCAGTGGTGGCTCTTGACCATGAGGACACCTCAAATGATGGCTTGAATGGAAGTGAGGAGACTTTAAATGCACAGTGTACTCTACCTTCAGCGGTGACCCTAGACCATACATACAGCATGGAAAGCAATGGGAGAGTGTCAAAGACAAGACATAGGCTGGAGGaatcagaggaggagggggaagatgtCAAACCAGACCCCTCCACTCTGACTCCCTCACTGAGGATCCGTGTCAAACTGGAGAGAGGGGTTGAGGTTGATTGCGCCCCCCTCCAGTGGGCTGAGGGGATGAACGATGGAGAGGGGAGTGAACATAGCGAAGACACTGAGAGCGCTGGAGGAACAGACAACAGGTTAACAGAGAGCAGCGGGGAAACGGATATCGATGAGGAGGACATCAGGCtgagtgaagaagaggaggaggaaattaAAAGCAAACAGGGGGAGGATAGGAATAATGACATCCACAGCGAAGAAGAGGACGAGGATGCTGAGACGCTTATTGACCAAGAGGGTGAGCCCTCCTCGTCTGAGCGGGAGTCAGAATTTGACCCAGAAGAGTTATCCGATTCTGACTCGAGGTCCAGCAGCACTGGGGAATCCAGTGGGTCTTCTTACACTCCTGTACGCACACGGAACGCCAAGACCCGGCCGTCCCGGACTAAGCAGCCCCAGACCAAGTTGTCCCAAGTCAAGCCTTATTATTGCATCTATTGTGCCAAAGGACCGTATCATAATATGGAATTTCATGTGAAGACCTGCAATATGAAGAAGGACTTTCAATGCTCTTTATGCCAAGCAGTCTTCCCTACCGAGATGGCCATGTTGGACCATCAGATTCGGACTCACTCTGAAGCCATATCGGGCCAAATGTACGCCTGTGAGTTCTGCCGCCAGGTCTTCCCTGATCTGGCCATCTACAAAAACCACAACTGTCCCAAAAAAGACAAACCCCCGCCATATGTCCCTGATCCCACTACGTGTATCTATTGTGGAACAGGGCCATTCATTAATATGGACGTTCATTTGAGAGGCTGCAGTTGGAAAGGCCTTACATGCACTGAGTGCAGGGTACTCTTCCATAATAGGAAGGCCCTGCAGAACCATAACGTTTCAGTTCATGGACAGCTTTCCACTATGTGTGCTGTTTGCGGCAGAGGGCCATTCATTGATATGGACTTCCATTTGAGGAGCTGCTCTAGGGATTGGTCCTTCCAATGCTCTGAATGCAAAGTCCAATTTCCTTCTGAGAAATCTCTGGTGGACCATAATCTTAAATATCACAGTGCCACATCAAAGACCTCTGACCAAGGTGTCTGTGTTTATTGCGGCAGTGGACCATTCACTAGTCTGGACATCCACATGAGGACCTGCTCTAAACAGAAGGGCTTAAAATGCTCTGTGTGCAAAGTTTTTTTCCCTACTGAATCAGTCCTGGCTGATCATATGGTTTGCTATCATAGCACCCCGTACCATGTCCATAGAACCCCATACCAAGTCCAGAGCATCCCATACCAAGTCCAGAGCACAGACTCAGAGACCCCTGAAGGTACCTGTCTCTATTGTGGCAGAGGTCCATTCACTAGTCTGGATATCCACTTGAGGACCTGCTCTGGGAAAAAGGGCTTCAAATGCTTTGTTTGCAACGTTTTCTTTCCTACAGAGACAGCCCTGGCCGACCATAAGGTTCTCGTTCACAGTATCCCATCAGAGACCCCTGACAAAGGTACCTGTGACCATTGTGGCAAGGGGCCATTCACTAATCTGGACAACCACATGAAGACCTGCTCTAAGAGGAAGTGCATCCAATGTTCTGTGTGCAAGTTGTTCTTTCCTAGTGATGTCCTGGCCAACCATATGATTTCCTATCACAGTACCAAATCCCGAGTTCAGAGCCCAGTCACAGAGATGCCTGACAATGGTGCCTGTGTCCGTTGCGGCAGAGGGCCCTTCACTAGTCTGGTACATCACATGAAGTACTGCAAAAAGCAGAAGGGCATCCAATGCGTTATGTGTAAAGCTTACTTTCTTACTGAGGGCAGTCTGGTGGACCATATTGTTTTGGCCCACGCTGACAAGCTGGTCACCCAAGCTGGTGGGTCCTCCGCTACAACTTTCTCCTTCGTACCCATGGCTATCTCTACAACCTCTGGCCGGCAGAGCCCCAGTAGCTCCACCCTGATGTGTTGCAGTAGTGGCATCAAGGAGCTGAAACGACTGGGCCCAGTCCCAGTGTCTGATCAGGGCCACCGTGCAGTTGGCCAGCTAACACCTGCTGGacagtctgtgtctctgcctagaGTAATGCTgtcttccacctcctcttcccaACCAGCTGTTCCTGTGGTGGCCACCTTGCTCATTGACAACACTGGTGGTGGTCCAGCGAAAATGGCCAGGCTGGTCCCAGTGGCCCCACAGACCAACCCTCCCAAACCTCAGGTCACGGCACCCACGCATACTAATACAGCAAAGCCCCTTGAGCAGTTCTCTAACCTTCTGCAACAGACTGTCCATCAGGCAAAATCTGTCCAACAGCAGACACCCAGGCCCATTGCCCTAGCCATGGACCCTATCAGATCCCCCACCACCCCATCCCCTAGACCTGTCTCAGCCTCTGCCCCGGGGAAAATCACCATGATCCACCACTCACCTGTCCATACCCCCCCTCTAGCGCAGTCTTCCCCCCTTACCATTGCCTTTGCCCCAGCCCCTCTAAGCATCATGTGTATGTTTGTGAATAGAAGTAAGGAGCTGGCCCTGGAGAAACGCATGAAGATGAGCTGGCGCTCCAAGTGCACCTACACCTGCCGCCAGTGCGGCGCCGTCTCGCAGCAGCCCTCGCTCAGTGTGAAGCACCGCTACCTCCACCGGGGCTCCCGGCGGTACCGCTGCCACTGTGGTAGGTCGTTCCTGCGGCGGCTGCACCTCCTGCGCCACTACCTCCAGCACGCCCAGGCCACCCGCTACATATGCACTGCCTGCGGTGAGACCTTCGACGGAGCAAAGTGCCTCGCACAGCACATGGTTGGAGCTTCCAACACGACTCGATGTCCAGGTGACAGCATAACTTTGAAGCTGAGGAAAGAGTGCCGGATGCCCTTCTCCTGTCACTGTGGGCAGGTGTTTTGTAGGCCCGCTGCTTTTCTCTGGCACAAACTGAAAAACACCCAAAGGACTTAACACTGAAATGGGCCCACAGCAGGGCCCAGTCTAGGCCCTATTCAAAGCAGTGGTTTTTCCATGGCTCACACAGGCAGGCAAGCCTATAATTTACTATGTTACGGGTAGAGGAGGACAATGCAGTTTGTGGACTTGCTTGACTTTTTTCACTGAATGAAAGATGATTCCTTAAGAAATAATCTATGTATGTATTGGTTTAAAATGTGTTTTCACTTCCACTAAAACATTGTTTTCACCAAAAGAGCAAAAATACAATCATATTAAAATGATATATTTTA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU259375 lncRNA downstream 3024 14267323 ~ 14267629 (-) True G226758
TU259372 lncRNA downstream 5875 14264538 ~ 14264778 (-) True G226755
TU259371 lncRNA downstream 6980 14262939 ~ 14263673 (-) True G226754
TU259366 lncRNA downstream 15013 14255404 ~ 14255640 (-) True G226749
TU259365 lncRNA downstream 15301 14255132 ~ 14255352 (-) True G226748
TU259381 lncRNA upstream 5444 14284586 ~ 14305692 (-) True G226764
TU259390 lncRNA upstream 29333 14308475 ~ 14308908 (-) True G226771
TU259674 lncRNA upstream 37529 14316671 ~ 14316928 (-) True G227013
TU259675 lncRNA upstream 37824 14316966 ~ 14317265 (-) True G227014
TU259678 lncRNA upstream 41578 14320720 ~ 14321226 (-) True G227017
XM_036975413.1 mRNA downstream 78347 14148828 ~ 14192306 (-) False LOC110510806
XM_021591959.2 mRNA downstream 168372 14099401 ~ 14102281 (-) True fpr1
XM_021591865.2 mRNA downstream 174549 14084118 ~ 14096104 (-) True LOC110510492
XM_036975385.1 mRNA downstream 191668 14026102 ~ 14078985 (-) False LOC110510454
XM_021591906.2 mRNA upstream 110056 14389198 ~ 14397282 (-) False LOC110510581
XM_036975404.1 mRNA upstream 110056 14389198 ~ 14397283 (-) True LOC110510581
XM_021591983.2 mRNA upstream 196540 14475682 ~ 14481655 (-) True LOC110510742
XR_005039678.1 mRNA upstream 229264 14508406 ~ 14511632 (-) False antol
XM_021581777.2 mRNA upstream 229270 14508412 ~ 14511494 (-) False antol
TU259117 other downstream 268845 13999736 ~ 14001808 (-) True LOC110538195
TU259125 other downstream 342820 13926674 ~ 13927833 (-) True wu:fe05a04
TU258842 other downstream 926278 13344074 ~ 13344375 (-) True G226294
TU258769 other downstream 1046138 13223884 ~ 13224515 (-) True G226224
TU258728 other downstream 1090381 13177178 ~ 13180272 (-) True G226187
TU259726 other upstream 149651 14428793 ~ 14475166 (-) True G227060
TU259714 other upstream 244038 14523180 ~ 14524854 (-) False psenen
TU259715 other upstream 244114 14523256 ~ 14524854 (-) True psenen
TU259832 other upstream 319647 14598789 ~ 14636710 (-) False LOC110503689
TU260846 other upstream 1257223 15536365 ~ 15538315 (-) True LOC110512327

Expression Profile