RNA id: XM_036974264.1


Basic Information

Item Value
RNA id XM_036974264.1
length 2327
RNA type mRNA
GC content 0.48
exon number 17
gene id si:ch1073-416j23.1
representative True

Chromosome Information

Item Value
chromosome id NC_048567.1
NCBI id CM023221.2
chromosome length 85311031
location 45580103 ~ 45587671 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

ACTGGTTCAGCGCCGACAGTTTTTGTAAATGTTTGTGATGTTACTAGCGTGTAGGCTAAAATGTTAACATCAAATAGCATTGTTAAGAAGTTACATTATATTGCCGACCTGTAGGCCAGGTCTACTAAACACCACAGCTGTTTGTTGGACAGGCAACGGGATCGCGCTGGGTGGTCACGTCCACATATCCAGCAGCAGTAAAATGGGCGAAGCCTTTATCAGGGAGCTTCTCTCTCTGTGCCTTCAACGGATTGCTGTGGAGGAAAATGCAATGAACAACACTGAACTTGAGTTTATTGAGGTAGTAAATAACTACGATGCCACAAGGAAGAAATGGTTACATGCAGAGCTGGAGCTGAAGAGGCACAAGGCGCTACTGTTGAAGTCCGACATAGCCCAGGCTGCCCTGGAGGTCAAACTAAAACACTGTCGCAACCAGGTCGATGTGGAGATCAAGAAGCGCTACAAGGCTGAGGCAGACTTTCAGTACCTGCAGCGGCAGATGCAACTGATGTGTGACATACTGGTCCACGACAGCAAGTCCAATGCGTGTCTGAATGACGAGCAGAGATCTCTGCTGGCCAACTTCAACCACAGGGGAGCCAACGTCACCCAGCACAAGAGCAAACGATTATCTGTCATCGATGAGTCTTCATTCCTGTCTCACTCTGATATTAGTTACGATAGAACTGATGATGACATGGACCTGGATGTGACAGCTGTGAAACCACTTAAGTCGAGAGCAAGGGAAAAAAGGCGCTCCTCCATGGGACCGACTGTCGGTGCGCACGCAGCGAAGAGGGGAAGAGTAGGTGGCCGTTCAGACGATCTCCTTGAAAGAAGACCAATGGAAAAGGAAGTTGAGACTACGATTGTGACCGCGTCCGTCACAACCCCAGAGAGCGGAGGTCAAATTCACATGGTGATCGACATCACCCAGGAAACACCTGAGAAACTACCCAGGACTTACCGGAAGGAGCACCAGATTTCATCTGTTGGCGAGCAAACGTCCGTGTGGACTCCCAATGATGAAACCGCTGTTGAGCATGATACTACTGTGGAGCCGGACACCATGACAGAAATGGAGTCCACCACAGAGCCTAGATTTAACCAGGTGTTCACTCCCACTGTTAGCAAAACTTTGAGACACTACTTCCTGTCTAAAACGGTGATTCGTCCAGAAACGTGTGTTCCATGTGGGAAGAGGATCCGGTTTGGGAAGATGGCTGTGAAGTGCAGGGACTGCCGTGTGGTAGCTCATCCCGAATGTAAACCGAAGTGCCTAGAAAGCTGCTCTGCCTCATGTGGAGCTCATGGAGCTGAGGACACGTTAGAGAGCTTTGCCCCACCTACCCAGCCTAGGATCCCTCAGATTATTGTTCAGTGCGTGAATGAAATTGAGAAAAGGGGATTGGAGGAGAAAGGCATCTACCGTGTTCCTGGGGGTGAGCGTATGGTGAAGGCGCTGAGGGAGAGATACATTAATGGGAAAAGGCCGCTCATGCTCAGTAGAGTGGATGAGATCCACGTTGTCTGTGGACTTCTCAAGGACTTCCTGAGGAAACTGAAGGAGCCTCTCATCACCTTCAGGCTGCATAGAACCTTCATGGAGGCCTGTGAGATTCCAGATGATGACGACAGCGCAGCAATAATGTACCGAGCCATAGGGGATCTGCCTAAGCCCAACAGAGAGACACTGGCTTTCCTCATGCTTCATCTACAGAGAGTCATGCAGAGCCCCCTCTGTCAGATGGACAAGAACAATTTGTCCAGAGTGTTTGGACCAACCATTGTTGGACATGGAATGGCAGAGCCCTCCCCAATGACCATTATGAGGGACACAAACATTCAGCCAATGGTCATAGGCAGAATGCTGTCGTTCCCTGCTGATTACTGGAAACGCCTCATCATGGTGGCGAGGGACCAAGTTATATCATCAGTTGTCGACGCCAACATCAATAGCGAGAGCCACAGTACAGACAGAGATCGTCTGTTTAAACCGCTGACTTCCCCTGAGCTGAGTAAATACCCCAAGACTCCTACCAGTGGTTCTCTTAAGGGCAGAATGAAGAATGCCTTCAACAATACtaACAGGGCAAAGACTGACCCGGGCAAAAATAAGTTCTTCACATCCCCCAACTGATATCATTGTGGCATAGACTGTTGGTATATTCATGAGTAACTAAAGCACTTCACATTTGGCTATCTTTTCAgtgtttaaaaatgttttgtatcATAACATGGAGTATAAGGGTTAGAATGGTGTACATTTTAGGAACCACACTAATGCATGAGAAACTTTAAATAAACTACATTATGAAACTGTT

Function

GO:

id name namespace
GO:0035556 intracellular signal transduction biological_process
GO:0005622 intracellular anatomical structure cellular_component
GO:0046872 metal ion binding molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU299384 lncRNA downstream 9611 45531611 ~ 45570492 (-) True G263273
TU299406 lncRNA downstream 72535 45507246 ~ 45507568 (-) True G263293
TU299222 lncRNA downstream 283650 45294739 ~ 45296453 (-) True G263122
TU299234 lncRNA downstream 319904 45255713 ~ 45260199 (-) True G263133
TU299227 lncRNA downstream 331283 45244750 ~ 45248820 (-) True G263127
TU299448 lncRNA upstream 3588 45591259 ~ 45591483 (-) True G263332
TU299489 lncRNA upstream 35316 45622987 ~ 45623447 (-) True G263373
TU299767 lncRNA upstream 246635 45834306 ~ 45834950 (-) True G263640
TU299771 lncRNA upstream 256412 45844083 ~ 45844346 (-) True G263644
TU300453 lncRNA upstream 296545 45884216 ~ 45884464 (-) True G264287
XM_036974236.1 mRNA downstream 13057 45539844 ~ 45567046 (-) True LOC110520026
XM_021596992.2 mRNA downstream 31366 45539844 ~ 45548737 (-) False LOC110520026
XM_021596991.2 mRNA downstream 31983 45539844 ~ 45548120 (-) False LOC110520026
XM_021596993.2 mRNA downstream 31985 45539844 ~ 45548118 (-) False LOC110520026
XM_036974234.1 mRNA downstream 117335 45434956 ~ 45462768 (-) True LOC110520023
XM_021597001.2 mRNA upstream 243259 45830930 ~ 45845044 (-) True LOC110520032
XM_021597004.2 mRNA upstream 433299 46020970 ~ 46024407 (-) True LOC110520035
XM_021597006.2 mRNA upstream 443811 46031482 ~ 46034427 (-) True LOC110520036
XM_021597007.2 mRNA upstream 456269 46043940 ~ 46047859 (-) True LOC110520037
XM_036974284.1 mRNA upstream 490390 46078061 ~ 46110748 (-) False LOC110504150
TU299385 other downstream 42561 45536332 ~ 45537542 (-) True G263274
TU299078 other downstream 475840 45099340 ~ 45104263 (-) True LOC110520012
TU299080 other downstream 567854 45010172 ~ 45012249 (-) True G262993
TU297567 other downstream 1548598 43989524 ~ 44031505 (-) True G261580
TU295450 other downstream 3254325 42322739 ~ 42325778 (-) True G259576
TU302286 other upstream 2011547 47599218 ~ 47599815 (-) True G265988
TU302595 other upstream 2444376 48032047 ~ 48033302 (-) True LOC110505248
TU304852 other upstream 3907806 49495477 ~ 49495803 (-) True G268310
TU304858 other upstream 3914745 49502416 ~ 49502971 (-) True LOC118944672
TU304903 other upstream 3976177 49563848 ~ 49565989 (-) False LOC110520112

Expression Profile