RNA id: XM_036974284.1


Basic Information

Item Value
RNA id XM_036974284.1
length 4844
RNA type mRNA
GC content 0.53
exon number 27
gene id LOC110504150
representative False

Chromosome Information

Item Value
chromosome id NC_048567.1
NCBI id CM023221.2
chromosome length 85311031
location 46078061 ~ 46335208 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

CTGAACTTGGAGCAGCTAGTGGCTGGTTGTCTGAGCTGTAGTCAGGGTGCATTTTGGAtctgtcttttttttcttcttcttctccctcttaaTTGTCTTCCGGAGCCATGAGCTTCTTCTAGCTGCCCAGGATGAAAAGTGGGAGACATTGTCGTTCCTGTTGCGGTTGGATTCTAGCTaagtgttgctgctgctgttacaaAGTGACAGAGAACTACTCGGTCAGCGGGCCTGAAGGAGCGAAGACCGAGTCGGTGGCCAACCTGCAGTCCCAGGCCTCGCTGAGCTCCATCCAGTCCAGCTCTCCGGGACCGAAGCGCTCGGGCAACACCCTCAAGAAGTGGCTGACCAGCCCTGTGCGTCGCCTCAGCCACGGGAGCAGCGTCAAGAAGTTCCCCAGCAAGCACAAGAAGAGGGACGGCCGCAAGAGCATCGACCTGGGGCCGCCTGAGAGTTCCCTGCACGACGGGAGCGTTGACGAGAGGTGCAGGAAGGAGCGCACCCTGTCCAAGTCCTCCTCTGGAAtgcagagcggaggagaggaggagcccgAGGACGACTCGCACACCCCCCTGCCGCCCCCCATggagatcatcaaggacccctcATCCCAGGAGGAGAAGTCCTCCGCATTGCTTGCTGCGCGTCAGGGCTCTGCCGATGTCCCCAGCGCTGCGGAGCTGGTCAGTGCAATAGAAAAGTTGGTCCAAACTAAGATGAATCTGGAGCCAGGTGCCTACCCCAGCTTCACCACTTTGACCCCTCCGGAACAGACCAGCCCAGCCCTGCCCAGGAACCCTGAAATGGATCAGAAGGCCAAAGCTCTGCGCGGACGCATGTTTGTCCTCAATGAGCTGGTGCAGACTGAGAAGGACTATGTCAAGGACTTGGGGATTGTAGTGGAGGGGTTCATGAAGACGATCGAGGATAAGGGAGTCCCTGAAGATATGAAAGGAAAAGACAAAATCGTTTTCGGGAACATTCACCAGATCTACGACTGGCACAAAGATTTTTTTGTGGGTGAGCTGGAGAAATGTCTCGAAGACAACGAGCACCTTCCTGAGCTTTTCATTAAACACGAGAGGCGACTACACATGTATGTGGTTTACTGCCAGAACAAGCCCAAGTCTGAATTCATTGTCGCCGAGTACGACACGTTCTTCGAGGGCGTACAGCAAGAGGTCAGCTCAAGACTTGGCATAAGTGACTTCCTCATAAAGCCAATTCAGAGAATTACCAAGTATCAGCTGCTTCTAAAGgacTTCTTAAAGTATAGTTCCAAAGCAGGACTAGATTGCCAAGAGATGGAGAAGGCAGTGGGTTTAATGTCCCAGGTCCCCAAGCTCTGCAATGACATGATGAATCTTGGCAGACTACAAGGCTATGAGGGTAAGCTGACCAGCCAGGGTAAACTGCTGCAGCAGGAGACGTTCTTTGTAACGGAACAGGACACGGGCGTGTTGTCGCGCAGCAAGGAGCGCAGGGTCTTCCTCTTTGAGCAGATCGTCATCTTCAGCGAGCTCCTCCGCAAGGGCTCGTCCACCCCAGGCTACCAGTTCAAGAAGAGCATCAAGGTGAGCTACCTGGGCTTGGAGGAGCATGTGGACAACGACCCTTGTAAGTTTGTGCTGTCGTGTCGAGGCTCGGCCGAGCGATTCACCCTGCAGGCGGCCAACCTGGACATCAAGCAGGTGTGGGTCCAACATGTCAGCCAGGTCCTGGATGCCCAGAGCAACTTCCTGTCTGCCCTGCAGTCTCCCATTGAGTACCACAAGGAGAAGGGTTGTTCCCAATCCCTCACCAGAAACCCGTCGGGCAGTCGGCCCCCCAGTTCCAACAGCaggcccctctcctcctcctctgtggggGCAGAGAAGCCCCCCCTGGCAGGACCGGGAAGGACCCCAACTCCTCTCAAACTATCTACCTCCAACGGCAGCTCCTGCTTTGACCCCATGAAACACAGCGAACGCTATGACTCCACGAGGCAGCATGACGGCATTGGATGTAACGGCATGTCCTCCACCATGATGGTGACCCAGGACTACAGTGCACTGAAGGAGAATGAGATCTGTGTGATCCAGGGCGAGATGGTGCAGATCATGGCCACCAACCAGCAGAACATGTACCTAGTGTACCGGCCCGCCAACAGCCAGTCCCCTGCGGCCGAGGGCTGGGTCCCAGGCCACATCCTGGGCCCCCTCACTAAAACGCTCAAAGACAGTACTGCTGACGCAAGCATCAAGAAATCTCTTTCATGGAATACCCTGCGCTCGAGAAAGCGAGCGGAGAAGGGTAGCAGTGGCAAGGGGGATGCAAAGGTTGAGAATGGACTCCGTAAGCCCAAGGAGATTCTCAGCACCAAGGTCACTGTCAAAGAGTCAAACAGCTCAGAGGAGTCAGATTGCGATGATGAACTCCCCAAAACTAGCATGGAGATAATGAATCCCAATTTTATACAAGAAGTGGCTCCAGAGTTCCTGATCTCACTAGCGGATGTGACATGTGCATTCGGGGAGACGGTGGTCCTGTGCTGCAAAGTGTGTGGACGTCCCAAACCCAACATCACTCTGAAAGGACCCGATCAGAGCCCGCTTGTCAACAACAGCAGGTTCACCATAAACATTAGGGATACGGGCGACATTCTGCTCAAGATCTGTAACCTGATGCCCCAGGACACCGGCATCTACACCTGTGTGGCCGTCAACGACCATGGCACcgcctcctcctccgcctccaTCAAAGTACAAGGTATTCCAGCAGCACCTGCGAGGCCAGTGGCCCAGGAGGCCAGTAGCAATGCAGTGATCGTCCACTGGCTCCCCCCAGCCAGCTCAGCTAACTGTGCTGTGTCTAGCTACACAGTGGAGTACAGGCAGGAAGACTCCCTGGTGTGGCAGCAGTCGGTGGTCTCCACAGTAGATGTGTGTGTGAAAATTGAAGATCTCATTCCTGGGGGGCACTACCAGTTCCGGGTCAGTGCCAGTAACCCCTGGGGCATCAGTCCGCCAAGCGAGCCCTCAAACATGGTGACCCTGCCCAGCGGGACTTCCACATATGATGGAACGGGCATTCAGTGGAAAGGCAACTTTGAATCGTCTTTCACAGAAATGTGTGAGATCGGACGgGGCCGATTCTCTGTAGTGAGAAAGTGTCTGAACAAGGCCAGTAAGAAGGAGGTGGCTGTGAAGTACGTCGCTAAGAAGATGCAGAAGAAGGAGCAGGTAGCCCACGAGGCGGACATCTTGTGCCACGTCCAGCATCCTCAGCTGGTGGCTCTGACCGACACCTACGAGTCCCCCACCTCCCTCATGCTGGTCTTCGAGCTGCTGGAGGGCGGGAGGCTGCTGGACTACCTGGTGGCCCATGATGAGCTGATGGAGGAGAAGGTGGCCTTCTTTGTGAAGGACACCTTAGAGGCATTGCAGCACCTCCACACCTGCAGAGTGGTACATCTAGACTTAAAGCCTGAGAACCTCCTGGTGGATCTCCACGTGCCTGTTCCCTGCATCAAGCTCATAGACTTTGGAGATGCGGTCCAGGTGTCTGGCCACCGTTATGTCCACCTGCTCCTGGGAAACCCAGAGTTTGCTGCTCCGGAGCTGATCCAGGGCACCCCGGTGTCACTGAGCACGGACGTGTGGAGCGCCGGTGTCCTGGCCTACGTCATGCTGAGTGGCGTCTCGCCCTTCCTGGACGAGAGCCTAGAGGAAACGTGCGTCAACATCTGCAAGCTGGACTTCTGCTTCCCCGAGGACTACTTCCAGGGAGTGAGTCAGGCGGCCCGGGACTTCATCAAATCTACCCTGCAgcaggaccccaggaagaggcCCAGTGCCACCGCCTGTCtccagcatccctgggtgggtgCCCACAGTGGAGACTACTCCAAGAACCCACTGGACACTGGTCGCCTGGCCTCCTTCATTGACAGACGGCGGCAGCTGCACGATGTGCGCCCTGTCACCAACATCAAGGGACTGGTGACCAGTAGCATGGGACACACCCTATAAACACCCTATGAATACAACACACAGGTGGAATGAAAACACACTGTTAGCAGTACTACAGGACCATTGATACATGGCTCCCCATGAAAATGTGACTCTGAATAGGGGATAATAACTTGTCAACAAACATGTTATGTGGATATCATGTCTGTTCAAAATGCCAGTAGCCAAGACAttgacatttgattgattgagatgTTTCAGAGCTGTAGTATGAAGCCATAGACGCCATATTACTCTTGTTGTGTCCATCTATTGTAAAtgccaacatttctaaatatCATCCTTGGAAATTATAACTATCAGAGAAAGATCTATGAGAGGTAGTATAACTGTTGAATGTAATTTATTGTAGAACGTGGTTAACACTTGAGTAAGTGCTATTGTATGTGAAGAAATATTCAGCATTGGTCGCTtggagcagtggttcccaaactgtggggtcGGCAGGGGGCCGCAGAGCAATACCAGTTCAAGTTatttatgttttactattttctacattgtagaataattgtgaagacatcaaaactatgaaatcatgtagtaaccaaaaaaagtgtttaacaaatcaaaatagattttagattcttcaaagtagccaccctttgccttgatgacagctttgcacactcttggcaatctctcaaccagcttcagaaTAACATATAGGTGGAATATAGGAACATATAGGAGTTGTTGGCTGCTttaccttcactctgcggtccaactcatccaaaaccatctcaattgggttgaggtcgggggattgtggaggccaggtcatctgatgcagcactccatcactctccttggtcaaatagcccttacaca

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU300537 lncRNA downstream 488 46075484 ~ 46077573 (-) True G264362
TU300577 lncRNA downstream 6243 46071534 ~ 46071818 (-) True G264400
TU300575 lncRNA downstream 8254 46069586 ~ 46069807 (-) True G264398
TU300573 lncRNA downstream 9959 46067901 ~ 46068102 (-) True G264396
TU300567 lncRNA downstream 18339 46059478 ~ 46059722 (-) True G264390
TU300617 lncRNA upstream 48232 46158980 ~ 46159180 (-) True G264439
TU300623 lncRNA upstream 55723 46166471 ~ 46166781 (-) True G264445
TU300624 lncRNA upstream 57606 46168354 ~ 46168574 (-) True G264446
TU300631 lncRNA upstream 72580 46183328 ~ 46183561 (-) True G264453
TU300639 lncRNA upstream 84938 46195686 ~ 46195927 (-) True G264461
XM_021597007.2 mRNA downstream 30202 46043940 ~ 46047859 (-) True LOC110520037
XM_021597006.2 mRNA downstream 43634 46031482 ~ 46034427 (-) True LOC110520036
XM_021597004.2 mRNA downstream 53654 46020970 ~ 46024407 (-) True LOC110520035
XM_021597001.2 mRNA downstream 233017 45830930 ~ 45845044 (-) True LOC110520032
XM_036974264.1 mRNA downstream 490390 45580103 ~ 45587671 (-) True si:ch1073-416j23.1
XM_021597021.2 mRNA upstream 436089 46546837 ~ 46582126 (-) False LOC110520042
XM_036974306.1 mRNA upstream 436089 46546837 ~ 46598946 (-) False LOC110520042
XM_021597019.2 mRNA upstream 436089 46546837 ~ 46599077 (-) False LOC110520042
XM_021597020.2 mRNA upstream 436089 46546837 ~ 46599080 (-) True LOC110520042
XM_021597022.2 mRNA upstream 607935 46718683 ~ 46721823 (-) True rprma
TU299385 other downstream 540519 45536332 ~ 45537542 (-) True G263274
TU299078 other downstream 973798 45099340 ~ 45104263 (-) True LOC110520012
TU299080 other downstream 1065812 45010172 ~ 45012249 (-) True G262993
TU297567 other downstream 2046556 43989524 ~ 44031505 (-) True G261580
TU295450 other downstream 3752283 42322739 ~ 42325778 (-) True G259576
TU302286 other upstream 1488470 47599218 ~ 47599815 (-) True G265988
TU302595 other upstream 1921299 48032047 ~ 48033302 (-) True LOC110505248
TU304852 other upstream 3384729 49495477 ~ 49495803 (-) True G268310
TU304858 other upstream 3391668 49502416 ~ 49502971 (-) True LOC118944672
TU304903 other upstream 3453100 49563848 ~ 49565989 (-) False LOC110520112

Expression Profile