RNA id: TU301655


Basic Information

Item Value
RNA id TU301655
length 3137
lncRNA type sense_over
GC content 0.39
exon number 2
gene id LOC110520051
representative True

Chromosome Information

Item Value
chromosome id NC_048567.1
NCBI id CM023221.2
chromosome length 85311031
location 47148341 ~ 47177648 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

TAAAATgtgtctttttttttcttttttccccAAAGGACTTCAAGAAGATTTTCAGTTGCCTTACTATGACATGGTGCCTTCAGATCCCTCTGTGGAGGACATGAGAAAGATTGTCTGTGACCAGAAACTGAGACCTAACATTCCCAACCAGTGGCAGAGCTGCGAGGCACTGCGGGTGATAGGCAAGCTGATGCGCGAGTGCTGGTACGCCAATGCTGCAGCTCGCCTCACCGCACTGAGGGTCAAGAAGACCGTCTCTCAGGTGACTGTACTCAAGGACATCAAAGATTAGCTTGGTAAGCTAGCCCACTGGCTGCTCCCCCCCCAATGTACTGTTATTAGTCGGGAGCAAAGCATCCTCTGGACCACACTGAAACACTCAACTGGGTGTTATTCATTAGAAACCAAACAGAATAAAACAGACTGGAGCGGGGAGGGGTCTACCTGAATTTGTCAAATAAGAAActgaaatattatatatatattttttgctatgttgtgcactaatgaatacgacTCAGCAGTGTGCATTCTCAGCTTGTGATGCCAAAGGAGCCTACTGCTGCTACCCAGCAGGGAacactcctgtcctgccctgcagTGTGTGACTGGAACTGCATCACCCAATCAAGAAAGAACAGGAAATGAAACTGTGACCTTTTTAGATGACAATGGATGATTTATAATGTACAGATTTTGTCTCTGCTACCTCAGATGTTTTTTAAGTGCCCAAAGCTTGAAGTTGCACATTGAATGCCATATAatagtgtatgtactgtagtgcTAGGCAACATGCAAAAATGATTGTAAATGTTACTGAGTAATGCACTCACTGCTATGCCTGATTAGTAAAGGACACCCAAGGTATACATCCATAAAGATAACTGCTACTTGGGTGCTGCCCCCATCCCCGCCCTATTCTATTTCGTATCCATATATATCGTTGTATATGACTTGAAAAATAATGCCTATATCAACTATACTCCGTATTTAAGTCTAAGATGTTGTATAACACAATATATTATTGTTAAAGGAGCAATCTGCAGTTCtaacaacaacaatgacaaagTGGACACCCACTGCTATTTTGgttaacagctgagggatgggggctggagaaatgtaagctatagatgcaaggactgaccatccatgatatcaacattatagtatTAACCCTATAATTAGGAACTAGAATACTAATAGTTGAAATAAGTATAGagatttaataggatctctggtTTTAACCATGCTTTGAGGATATACAGTATTTGTGTACAATGGAACTGTTTACAAACAATGGcgtaaaacaagtttatattttggttttcgATGTGCTACGACAGTTTTACTCAGCTCGTTTACaagttatattctttaagaatcaataATGTCATAAAAGTGAAAAAAAAACGGATGTCGCtattgcagattgcccctttaaacacATCCAAACGCACATGTACTTTGCCTAACAATCACATCTTCTCTGTGAAGCACAACTTTTGTTATATTACAGAAGAGAGAAGTTTtagaaaaaaacatttcaatatatttaatatatagaTAGAATTATGGAAATACTTTTATTCCATATAAATATTGTTATATCCAAAGCCTTTAATTGAATGCTACTATATGTAGGGACACTATGAAATGCCAATgtgaaaatatatacatatatatagaaAGTACAAAATGTACTACATTGTTGGTATAATGTACACAAAGCAGTACACCCTTTACCCAATATAATATGCAAACACAAAAAAATGACCAAATTGTTCACCAAATATTTTGTTTGTCTACTAAAGAGGGATTTTTCAGTGAGCCGAGTTTGAACAGTGGCCGTGTTCAGACTGCTTATGTGAACACTAATGCCATTGTCAGACTTGGCTTGTAATCTCTTGCCATAACAGGCTTAGGAACGGGGACTTAAACTAAATCTGCTGTGGGTGTCTCCTGTACACAACGTGGCAGGCCTGGTGCTCTGTTTGTGTAGGCCTGCAGCAAGTTCAATCAGAGGTATACGACATGTATATCGCACAGACATTTTGCCAACGTATGTTTGgaaatttgcaaatgtattgccTGTAGTGTCATTTTGCTTAAACAAAGCCTGCGATTTGAGATGGTTTAAGATGGGTGCTGTTTAGAAAAATACACTTGGCTTTTAATGACTTATGTAGATTTGTTCTTGTTTACTTTAATATTGTTTGCTTATGCAAATCAGGGCTCTATTGAGTTTGGATCGCTAAAGTTCAGAgtttacagcgtgattgaaatctaaaggcaatgttcccgcgttagCGAAGACTGCGCTCACGGTAAACGCTGTcagctcaatcggaaatgaccttcTGATCTCACACCCTGGAACGCTTcggcgatacagattgaatagagccctaaactGTTTAACATCTTTGTAGTTCATGCAAGTTAGCATCTGTCTGGGGGGTCAATGTACAGTAGCATGGGCAATGTATCATGGGCAATGTAGCATCTGCAGTTGCTTCATAGGTGTACAAAGTGACACGCTTGCTGCTCTGTTGCCCATATAGCTGTATCATTAAGTCAATGTTACAATTATGTTTTGTACGTAAAAACAATGACCGTTTCACTTTTAATATGTGTAATTATTTCCCCAAAattgtaacaaaatatatattgacATTGCAGTATTTAGTGCTCTGCCTGTATCCTGTGGACAAGCAAGCTAATGTTAATTGTCTAATTGGAAATGAAGCTGTGCTTTTGTTGTCATGGCCTACAGTCGAGTCAGTTTCCCTGAGGAAACTCAAGAGGAAACTGGACGTCAAGAGGACGTGTGGAATTGTTTTGCTTCTACAGACCATCTGTCGTTCTGAAGAAAGGAGACTCATTCTGTCATTTCTGGTCGAATATCTGTTGAAAGTTGTGTATGACACAATTTGGAAGTGTTGCCTGCTCTGGGACTGTGGTATTCGTTTTCTAAAGAAGGTTTTGCGTTGAGAAATGTCATCCTCCAATGAATTTGCTTAATTCTTTCTGTTGACAAGAGCAACTATTTTGTGTTGTGAATTCAGATATGGGTCTCTTATGTCAATATGTCTTTCAGTCTTACACTATTTATTAAAAATATGTGACAACGGTGA

Function

GO:

id name namespace
GO:0007178 transmembrane receptor protein serine/threonine kinase signaling pathway biological_process
GO:0006468 protein phosphorylation biological_process
GO:0016020 membrane cellular_component
GO:0005524 ATP binding molecular_function
GO:0005024 transforming growth factor beta-activated receptor activity molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU301648 lncRNA downstream 10641 47137435 ~ 47137700 (-) True G265382
TU301647 lncRNA downstream 11519 47136607 ~ 47136822 (-) True G265381
TU301646 lncRNA downstream 12155 47135958 ~ 47136186 (-) True G265380
TU301212 lncRNA downstream 181404 46966733 ~ 46966937 (-) True G264998
TU301206 lncRNA downstream 185411 46962660 ~ 46962930 (-) True G264992
TU301665 lncRNA upstream 7126 47160058 ~ 47160345 (-) True G265391
TU301667 lncRNA upstream 8757 47161689 ~ 47161934 (-) True G265393
TU301662 lncRNA upstream 93096 47246028 ~ 47250041 (-) True G265388
TU301819 lncRNA upstream 263585 47416517 ~ 47418040 (-) True G265543
TU301812 lncRNA upstream 289859 47442791 ~ 47445204 (-) True G265536
XM_021597028.2 mRNA downstream 2864 47138366 ~ 47145477 (-) True LOC110520049
XM_036974309.1 mRNA downstream 141224 47001807 ~ 47007117 (-) True LOC110520047
XM_021597025.2 mRNA downstream 141257 47001807 ~ 47007084 (-) False LOC110520047
XM_021597022.2 mRNA downstream 426518 46718683 ~ 46721823 (-) True rprma
XM_021597020.2 mRNA downstream 549261 46546837 ~ 46599080 (-) True LOC110520042
XM_021597031.2 mRNA upstream 35550 47188482 ~ 47225746 (-) False LOC110520052
XM_021597030.2 mRNA upstream 35550 47188482 ~ 47228661 (-) False LOC110520052
XM_021597034.2 mRNA upstream 35550 47188482 ~ 47228663 (-) True LOC110520052
XM_021597053.2 mRNA upstream 572342 47725274 ~ 47747611 (-) False LOC110520059
XM_021597051.2 mRNA upstream 572342 47725274 ~ 47747612 (-) False LOC110520059
TU299385 other downstream 1610799 45536332 ~ 45537542 (-) True G263274
TU299078 other downstream 2044078 45099340 ~ 45104263 (-) True LOC110520012
TU299080 other downstream 2136092 45010172 ~ 45012249 (-) True G262993
TU297567 other downstream 3116836 43989524 ~ 44031505 (-) True G261580
TU295450 other downstream 4822563 42322739 ~ 42325778 (-) True G259576
TU302286 other upstream 446286 47599218 ~ 47599815 (-) True G265988
TU302595 other upstream 879115 48032047 ~ 48033302 (-) True LOC110505248
TU304852 other upstream 2342545 49495477 ~ 49495803 (-) True G268310
TU304858 other upstream 2349484 49502416 ~ 49502971 (-) True LOC118944672
TU304903 other upstream 2410916 49563848 ~ 49565989 (-) False LOC110520112

Expression Profile