RNA id: XM_021597031.2


Basic Information

Item Value
RNA id XM_021597031.2
length 3531
RNA type mRNA
GC content 0.51
exon number 12
gene id LOC110520052
representative False

Chromosome Information

Item Value
chromosome id NC_048567.1
NCBI id CM023221.2
chromosome length 85311031
location 47188482 ~ 47228663 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

gggggagaagagaagggtTTGCCTTGCTcggagacagagcgagggagccCTGGTTGGCCTGTTGGAGGATCAGGTTACACACACGctgtcattaacagcagactgtGCCatgcacagagatgcagtgctTCAAGTCTGAGCAGGAATCTGGGGCTGGCTCAGGCGTGGTGGTGTAAGTGCCTCCGTCTCAAACCAGcctgggagtgagagagaagagcttgtgtgagagagagcggaggaagAGCGAGGGAGGCGGGACTTGGCGGAGACTCCGACGACAGACGAGCGATCTCCTATAGTCGCGCTGTGACGCCGGCGCGTTTTTGGATTCCAACCCATTTTAAACATTGCGTTTGAGCTACAGACTGCTGGGTTGTTGCATTGGATTCGTTTATTTCTTCTGCATCCACTAATACCAACCATTAGTTAACGGGGGCTGAGCTAGAGCTGCGTTTTGCTCTCCGACGCTTACAAGCTACAAGAGAGTCGTCAGAAGGTCTACAATGTTAGACGGCGACATGTTGTTCCTGGTCTTCACACTTCTGGTTTTACCCTCCTCCAGCGTGAAAGATGAGGGGAGTGTGCGCGACTACGAGTGTGCGTGCGATGGGCCGTCATGCGACGGAGGAGACCGGTGTTTTGGTCAGCAGTGCTTCTCGGCCCTCTCCGTCCAGAATGCCATTTCCGTCCAGCAGAAGGGATGCATTGTGGGCCGGAGTGAGGAGTCCATAAGTTGCGAAAGCCCCCCATCCCATAACCCGACGGTGGAGTGCTGCCATGGCGACCTTTGCAACATGAATGTCACAGTGGCAACACCAGCGAGAGATGAGGAAGTGATGCCTGCCTTGCAAggcattgagtgtgtgtgtgaggggcggTCGTGTGATGGCGGAGAGCGCTGTACGGGCCAGCAGTGTTTCTCCTCTGTCAAGATCAGTGACGGGTTTGTGGTTCACCAGAAGGGCTGCCTTCGGGATGACGACCAGGGGAGAGCCACCTGCGCCACCCCTCCTTCTCCCAGCCACATAGTCAAGTGTTGCCAGGGGCACCTGTGTAACCTGAACCTCACTGTGGAAGCACCAGCGAAAGAGGATAAAGTGAAGTCTGTCGGCgagcatgagtgtgtgtgcgagGGGCGCTCGTGTGCCACCGGGCGGCGCTGTGTAGGCCAGCACTGCTTCTCCAGTCTGACGGTCAGCGACGGAGCCCTGGTCTCCCAGAAGGGCTGCTTCAAGGTGTACGAGCAGAGCAGGATGACCTGCAAGACGCCGCCCTCCCGCGACCAGATCGTGGAGTGCTGCCAGGGCCACCTGTGTAACCTGAATATCACCGTGGAGCTGCCTGTCATGGCAGGCGACCTTCCCAACTACAGCTTGACTACACTGGCCATCGTCATCGTGGCTCCGGTCATCGTGCTCATCGTCCTCTCAGGCATCGCCATCCTGGTGTTCAGACGGATCCACCAGAACCAGATGGAGAGGCTGACGGCCCGGGAGGCGGAGTACGGCACCATAGACGGACTCATAGCCTCCAACGTGGGGGATAGCACACTGGCGgATTTGCTGGATCATTCGTGCACGTCGGGAAGCGGCTCCGGACTCCCCTTCCTAGTTCAGAGAACCGTCGCTCGACAAATCACACTCAACGAATGTGTGGGTAAGGGGCGCTACGGTGAGGTTTGGCGAGGCCAGTGGCAGGGGGAGAGTGTGGCCGTGAAGATCTTCTCCTCCAGAGATGAGAAGTCCTGGTTCAGAGAGACTGAGATCTACAACACAGTGCTGCTGAGGCATGAGAACATCCTGGGCTTCATCGCTTCGGACATGACTTCCCGAAACTCGAGTACACAGCTGTGGCTAATCACCCACTTCCACGAGATGGGCTCCCTGTACGACTACCTGCAGCTGAGCACCCTAGACACAGCCAGCTGTCTGCGCATGGCTTTGTCCATCGCCAGCGGCCTGGCACACCTCCACGTGGAGATCTTCGGCACCCAGGGCAAGCCGGCCATCGCCCACCGAGACCTCAAAAGCAAAAACATACTCGTCAACAAGAACGGCCAGTGCTGCATCGCCGACCTGGGTCTTGCTGTGATGCATTTCCAAGACACAAACGAGCTAGACGTGGGCAACAACCCGAAAGTGGGCACGAAGCGCTACATGGCCCCAGAGGTCTTGGACGACTCCATCCAGATGGACTGCTTTGAGTCCTTCAAGAGAGTGGACATCTGGGCCTTTGGCCTGGTCCTGTGGGAGATTGCAAGGAGCACGGTCAGCAACGGCATTGTAGAGGACTACAAGCCTCCCTTCCATGACGCGGTGCCCAGCGACCCCAGCTTTGAAGACATGAAGAaggtggtgtgtgtggaccagcAGAGACCCAACATCCCCAACAGATGGTTCTCAGACCCAACTTTAACGTCCATCGCAAAACTTATGAAGGAGTGCTGGTACCAGAATCCATCCGCCAGATTAACGGCGCTACGCATCAAAAAGACTCTGACAAAAATCGACAACTCTCTGGACAAAATTAAAACGGACTGTTGAGCTTCTTCCTTGTTGGTGCGCAGGGAGAGGAGACCTAAAGGCCTTTAAAGACATCCAGCAGGCAGTTCGGTTCCCCTGGACAACACACAGGAGAAAATGGACCGGTTGAGCTCAGTGCTCTTAAAGTGGCacgttttgtatttattttaaacaCTTGGTGGGACAAATTTTGGCATCCAAAGATGGCTTACAGGGCATTTAAGACTGCCAATAGTCTTGGATATTAGGTGACTATCCCTTTTTAAGATATAGGAATATTGAACTAATAGTCACATTCTTCAAGGAAGAAACTGTTACCTGGGCATTTGAGTATTGTATATCGCTTTAGAGCTGCCGATTTTCTGAGAAATGTCTGAACGTATTTCATTTAGCAATATTGGCCGTGCTTTATTGCTGTTATTGCACTAGCGATCTTTGCATTCCTGGCTTGCACTGTCGCTGATGCATTTGGAGAAAAGAACAACTTGCCaaaaaaatgttatgttttatAGTTCACACAAACTCCAGTAATCAGAatgaggggagagaaaaaaagagttaAGTTCTACTTTGACTGCATCGCTCTTGCACTGCTGTTTACAATATTGTTAGAACAATTCTCTTGGTTTTTCATCCAACCGGTAACGTATTTAGCTAACACATTGTGCTGCAGACAGTTATAGCCAGTCTTTGCTCCTTACTTTGGCGACGTCGTCTAACGTCTCCTGTCACAGAAACGTTTTATATCACCATACATTTCACATTTGTGTACCTGttctttgttttggttgtttcatcAGCTTAATTGAGACATGCTAAAAGAGCAAATAAAAATATTTACTAGATGACGCTGAACTCGATTCATACGGGAGCAGAAGTTATGCCTGTAAAGTTATATCGTCTTAATTTGTGCATTGTCAAAGTAATTGAAGTCAAACTTcagccttttttttttacattttatatcAAGTAGTGATTTCTATGAATTAAATAGAGAAAAAAACGCAGA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU301667 lncRNA downstream 26548 47161689 ~ 47161934 (-) True G265393
TU301665 lncRNA downstream 28137 47160058 ~ 47160345 (-) True G265391
TU301655 lncRNA downstream 35550 47148341 ~ 47152932 (-) True LOC110520051
TU301648 lncRNA downstream 50782 47137435 ~ 47137700 (-) True G265382
TU301647 lncRNA downstream 51660 47136607 ~ 47136822 (-) True G265381
TU301662 lncRNA upstream 20282 47246028 ~ 47250041 (-) True G265388
TU301819 lncRNA upstream 190771 47416517 ~ 47418040 (-) True G265543
TU301812 lncRNA upstream 217045 47442791 ~ 47445204 (-) True G265536
TU302196 lncRNA upstream 254140 47479886 ~ 47480112 (-) True G265901
TU302289 lncRNA upstream 378098 47603844 ~ 47604053 (-) True G265991
XM_036974311.1 mRNA downstream 10834 47148344 ~ 47177648 (-) False LOC110520051
XM_036974312.1 mRNA downstream 15829 47148344 ~ 47172653 (-) False LOC110520051
XM_021597028.2 mRNA downstream 43005 47138366 ~ 47145477 (-) True LOC110520049
XM_036974309.1 mRNA downstream 181365 47001807 ~ 47007117 (-) True LOC110520047
XM_021597025.2 mRNA downstream 181398 47001807 ~ 47007084 (-) False LOC110520047
XM_021597053.2 mRNA upstream 499528 47725274 ~ 47747611 (-) False LOC110520059
XM_021597051.2 mRNA upstream 499528 47725274 ~ 47747612 (-) False LOC110520059
XM_021597052.2 mRNA upstream 499528 47725274 ~ 47747614 (-) False LOC110520059
XM_021597050.2 mRNA upstream 499528 47725274 ~ 47747615 (-) False LOC110520059
XM_036974336.1 mRNA upstream 523883 47749629 ~ 47789697 (-) False LOC110520061
TU299385 other downstream 1650940 45536332 ~ 45537542 (-) True G263274
TU299078 other downstream 2084219 45099340 ~ 45104263 (-) True LOC110520012
TU299080 other downstream 2176233 45010172 ~ 45012249 (-) True G262993
TU297567 other downstream 3156977 43989524 ~ 44031505 (-) True G261580
TU295450 other downstream 4862704 42322739 ~ 42325778 (-) True G259576
TU302286 other upstream 373472 47599218 ~ 47599815 (-) True G265988
TU302595 other upstream 806301 48032047 ~ 48033302 (-) True LOC110505248
TU304852 other upstream 2269731 49495477 ~ 49495803 (-) True G268310
TU304858 other upstream 2276670 49502416 ~ 49502971 (-) True LOC118944672
TU304903 other upstream 2338102 49563848 ~ 49565989 (-) False LOC110520112

Expression Profile