RNA id: XM_036974821.1


Basic Information

Item Value
RNA id XM_036974821.1
length 3873
RNA type mRNA
GC content 0.51
exon number 20
gene id LOC110520314
representative False

Chromosome Information

Item Value
chromosome id NC_048567.1
NCBI id CM023221.2
chromosome length 85311031
location 61202903 ~ 61254638 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

AATCCTCATATCTGAGATCATCATACAGGGCACTTGTTACATCGTAATATGAGATGTACGGCAACATAGTTAATTGACTTTGCTGTTTGATTTGTTCGCTTGCAAATTACATTAGAACAGTAGGCTTCATTGATTTCGCATTTACGTGCGTTCTTTTTGGCCCTTACTGCTATCCATAGCAAAACTTGTGGAAAAGGACAGGGGGGAAATGGCTACGAAGACGAACGACAACAACGATTTAGCAGTGGAGTTGAGCTCTACTTCTAAAGAAGAGCATTCCAGGTCTAGTGGCATGGGTCAGCCCCGCAGGAGCCCgtcagaggaaggagagggggaaaacGATGTGGCACAGCAGAGGAGCAGCATGGAAGCTACAGAGGGGGCAGATAGCCCTGCAGCCAGTCCTGGACACAAAGGTCCCAGAGCGGCCAGCTCAGAGGCCCCCATAGTTCTAGGCAGTCCTGGAGTGGCCAGTCCAGGAGTAGCCAGCTCCAGAGCCACCAGGGGTAGTAGGGCCCCATCCAGTGCCAGTGTCAGCCAGGAGGAAGATGAGTCCAGCGGCTCTGATGGGAGCAGTGATGAGGCAGTAGGCTGCAGGATGAAGAGCAGCGTGGCACAGATCATGCGTGGTCCAGATGACCAGAGTGCGAACAGAGGCAGGAGCCCCACCCCAGATGACAGGGATGGTGATCGCCGCAGTTCCTGCTCTAGGTCCCGTTCCCGAAGTCAGGAGAGGGACCGGCGCTACGGTGGAGGAGGTTATGGCAGGTCAAGGGAGGATGATCGTAACAGGGACCGATACTACGAGCGCCAGTCAAGTCGTGACAGAGAGGCTGAGTTCAGGAGGAGAGGCCGGTCGCCCTCCCCAGCCAAGAAAAACCCAGCTACAGAGGAACCACCAGTGAAGAAAAAGAAGGAGGAACTGGACCCTATCCTGACCAGGACTGGTGGAGCTTACATTCCCCCGGCCAAACTGCGCATGATGCAGGCCCAGATCACTGACAAGAGCAGTCTGGCGTACCAGCGTATGAGCTGGGAGGCTCTGAAGAAGTCCATCAACGGTCTGATCAACAAGGTGAATGTGTCCAACATCGCCATGATCATTCAGGAGCTGCTGCAGGAGAACATTGTTAGGGGCAGAGGTCTCCTGGCCAGGTCCACCCTGCAAGCCCAGAGTGCTTCGGCCACCTTCACCCACGTCTATGCTGCTGTGGTAGCCATCATCAACTCCAAGTTCCCTCAGATAGGAGAGCTCATCCTCAAGAGACTCATCCTTAACTTCCGCAAGGGCTACCGGAGGAACGACAAGGCACAATGTCTCACGGCATCAAAGTTTGTTGCTCATCTCGTCAATCAGAATGTGGCCCATGAGGTCTTGTGTCTGGAGATGTTGACTCTGCTCCTGGAGAGACCTACTGACGACAGCGTGGAGGTGTCCATCAGCTTCCTCAAGGAGTGTGGCCTCAAACTCACGGAGGTTTCCCCTAGGGGCATCAATGCCATTTTCGAGCGGCTGCGCAACATCCTTCACGAGTCAGAGATTGACAAGCGGGTGCAGTACATGATCGAAGTGATGTTTGCCATCAGGAAGGATGGGTTTAAGGACCACCCTATCGTCCCAGAGGGGCTGGACCTGGTGGAGGAAGAAGATCAGTTCACACACATGCTGCCCCTAGAGGACGACTACAACCAAGAAGATATACTCAATGTCTTTAAGATGGATACAGACTTCTTGGAGAACGAGGAGAAGTACAAAGCAATTAAAAAGGAGATCCTGGATGAGGGCAGCAGCGACTCTGGAGAGGATGCCAATGgaagtgatgatgatgaagatgatgataatgatggagaaaaggagggggaagagggtggAGATGAAGCAGAGAAAGTCACCATCTTTGACCAGACGGAAGTCAACCTAGTCGCATTTCGCCGTACCATCTATCTCGCCATCCAGTCAAGTTTGGATTTTGAGGAGTGTGCCCACAAATTGATCAAGATGGACTTTCCTGACAGCCAAACGAAAGAGCTGTGCAACATGATTCTGGACTGCTGTGCCCAACAGAGGACATACGAGAAGTTCTTTGGTCTTCTAGCAGGGAGGTTTTGTCTGCTGAAGAAGGACTACATGGAGAGTTTTGAGGCCATCTTCATGGAGCAGTATGAAACCATCCATCGCCTAGAGACCAATAAACTGAGGAACGTTGCTAGAATGTTCGCCCATCTCTTGTACACAGACTCAGTCCCGTGGAGTGTGCTGGAATGTATTAAAGTCAGTGAGGACACCACCACCTCATCCAGTCGTATCTTCGTCAAGATCTTGTTTCAGGAGCTCTGTGCCTATATGGGACTTCCCAGGCTCAATGAACGACTCAAGGATATGACGCTGCAGCCCTTCTTTGAGGGTCTTTTTCCTCGTGACAACCCCAGGAACACCAGATTCGCCATTAATTTCTTCACCTCCATCGGCCTGGGTGGACTTACGGATGAGCTCCGTGAGCATCTAAAGAACGCCCCCAAGATTATCATGACCCAGAACCAGGAAGTGGAGTCGTCTGACACCGACTCGTCCTCTGACTCGTCCTCCTCAGACAGTGACAGCAGCGACAGTGACAGCTCTGACTCTTCCAgtgactcctcctcctcatccagcAGCAGCTCGGATTCTGAATCGAGGCGTAAGAAGAGCAAGGGCCAGAGAAAAAATAAGAAGAGTGACAAAGACAAGAAGAAAGACAAGATGACCAAGTCCAAGGCTTCTTCCAAAAATACCTCCTCAAATCAGAAGTCACCACTGGAGCAACGGCCCAATAAGAGCCCGAGAAACGACAACCGTCGCTGCAATGACAGCAGTAGCGATGAGGAGGCGGCGAAGCGTGGTGGGAGTAGACCAGAGCCTGAGGACCACCACAAATTCTCTCGCCACCGGGGTCGAGAAGAAGACGCGCCGCAACTCATGTATGAGAGACCCCACCGCAACCGTGGGGGGCACCAAGATGAGGAGCAGCCTCGTGGCAGGCCTGACAGAGGCAGAGACTACGAGGACAGTGACAGACATCCAGAGTCCCGCAGGCACAACAGGGACGATGGGGGGAAATATGATGGGAAACACCAAGCCCCCCAGGTTGACCAGGCTGACCATGACAGAGTCAGACACCGCAGCCCTGAGAAGGAACCAGCCaggtacagaaacagagagaggtcaAAGTCACGGGAGAAGAGCAGCCGCAAGGAGAAAGACACAGATTCTTCCAGGAACTCGTACAGGAACGGGGTGGAGCAGCAAGCAGAGCGGGCGGACAAGGAGAACCGCCATCACTCTGACAGATACAGAGAACCCAGGAGAAACGAGGAACGGAGCAGGGATAGCTCCCCACGTAGACGGAGATAGCCGGACGGACGTTACTCAAAAAGGAAATGTACTAGGCTTACATTCCAATGTCCATACTAGCATACTACAAGTACATGTCCAGAACTTCATTCTAAGTAGTGTGCTAGTGTGAACGTTGAAACAGAGCCTACGCTGTAGTCATGCTGTTCATAAGCCAGTTGTAAATTGGACTCATCCATCTCATCCTCTGCCATAGTTCTGTGCCTCTCAATGTATACAGTTTATGCataaaatgtatgttttataTCGCCCAATGAAATGTCTTTCTTAGAAATGGTTCAGCGGTTGTATTGGAACAATAACAGTACAAAGCTCTGCTTGCAGAAGTAGTGTATATATGAAGGTTTCTTTCTGTGGGTTCTATCAATGTAAGACTGGTAATGTTAAGAAAATGTGTGAAGTTTGTATCTGATGCAACCtattttgggggagggggggggggggggtaaaaagaATGAGACAACATATTAAAAACCTTTCAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU320074 lncRNA downstream 57682 61143346 ~ 61145221 (-) True G282206
TU320047 lncRNA downstream 92548 61109128 ~ 61110355 (-) True G282179
TU319993 lncRNA downstream 172142 61030386 ~ 61030761 (-) True G282125
TU319749 lncRNA downstream 310080 60891843 ~ 60892823 (-) True LOC110520309
TU319665 lncRNA downstream 542408 60659266 ~ 60660495 (-) True LOC110520306
TU320962 lncRNA upstream 78301 61332721 ~ 61340510 (-) True G282986
TU321063 lncRNA upstream 117616 61372036 ~ 61372475 (-) True G283082
TU321069 lncRNA upstream 126322 61380742 ~ 61380944 (-) True G283088
TU321081 lncRNA upstream 139242 61393662 ~ 61393876 (-) True G283100
TU321086 lncRNA upstream 143638 61398058 ~ 61398347 (-) True G283105
XM_036974819.1 mRNA downstream 11030 61034879 ~ 61191873 (-) True LOC110520312
XM_036974820.1 mRNA downstream 41832 61034879 ~ 61161071 (-) False LOC110520312
XM_036974818.1 mRNA downstream 189726 60974920 ~ 61013177 (-) True LOC110520311
XM_021597541.2 mRNA downstream 189728 60974920 ~ 61013175 (-) False LOC110520311
XM_021597540.2 mRNA downstream 190600 60974920 ~ 61012303 (-) False LOC110520311
XR_005051416.1 mRNA upstream 16096 61270516 ~ 61270572 (-) True LOC118964366
LOC110520318 mRNA upstream 252554 61506974 ~ 61548252 (-) True LOC110520318
XM_021597549.2 mRNA upstream 324159 61578579 ~ 61583060 (-) True LOC110520317
XM_021597553.2 mRNA upstream 409285 61663705 ~ 61705190 (-) False LOC110520320
XM_021597551.2 mRNA upstream 409285 61663705 ~ 61728597 (-) False LOC110520320
TU315276 other downstream 3613720 57584386 ~ 57589183 (-) True G277749
TU315188 other downstream 3799328 57402984 ~ 57403575 (-) True G277673
TU315090 other downstream 3905141 57270782 ~ 57297762 (-) True si:dkey-91i10.3
TU312498 other downstream 5791416 55410143 ~ 55411487 (-) False G275250
TU322065 other upstream 1460155 62714575 ~ 62715177 (-) True G284018
TU324819 other upstream 3715129 64969549 ~ 64970755 (-) True G286522
TU324898 other upstream 3759839 65014259 ~ 65029736 (-) True G286580
TU324968 other upstream 3800280 65054700 ~ 65055211 (-) False G286638
TU324969 other upstream 3800280 65054700 ~ 65075985 (-) True G286638

Expression Profile