RNA id: TU253492


Basic Information

Item Value
RNA id TU253492
length 797
RNA type TUCP
GC content 0.46
exon number 4
gene id G222023
representative False

Chromosome Information

Item Value
chromosome id NC_048567.1
NCBI id CM023221.2
chromosome length 85311031
location 8853817 ~ 8949187 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

TTGTACCAATTAGTATTCGAGACCCCTGTGAGAACCATGGGATTTGGTGGCGGAATGTTCGCTGCCATAGCGATGGAATAGGAGATATCTTTGCCTTCAGCCATCGGGGTAACATTAGGGATATAAGGCCAGAGCTGCTTCATCACCGCACAACTGCAACCTGCAATTCACCTCTTCAATCTACTGCTCCTAAATACTTGGAAGTTCATTTAAGAATTTGAGAATCATGAGTAAGAACTACATGAGCACCGAGAGGATTCTGCTGAAAGAGGACTACCTCCTCTCCAACAATGGACAATTTAAAGCTATCTTTCAGACCGATGGCAACTTTGTGCTCTATGGTTGGGGTCGGGTTGTCTGGGCATCAAACACTGTGAACAAAGATGCTCAGAGGCTCATCCTCCAAAAGGATGGAAACCTGGTCATCTACACCAAACAGGACCATCCCATTTGGTCAAGTAACACCGCCCGTTGCAACAATACACAGAGAGGCCACCTCACCCTCACTGACAAAGGTACCCTGGAGCTCTATAGAGACCGAGAGGTGATCTGGACATCGTAACATCGACCAGCCCAACAATGCACAAAGAGGTCACCTCACCCTCCTTGACGAAGGTGCCCTGATGCTCTACAGTCACAGAAATGTGGTCTGGTGCTCTCGTGAGGACACTAGTAATGAGGCAGAGTAACAGCTTCACTTGACCATACCTGTCTACATCTACCACTAAACTGTATTCAAAAGCCTAAAGGCTTTTTAACTCTTTGATTTGGTCAAATAAAACTGTATTGACTTAAAG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU253467 lncRNA downstream 50151 8803105 ~ 8803666 (-) True G222009
TU253465 lncRNA downstream 50798 8801951 ~ 8803019 (-) True G222007
TU253432 lncRNA downstream 81884 8770564 ~ 8771933 (-) False G221988
TU253533 lncRNA upstream 32390 8953424 ~ 8953678 (-) True G222059
TU253538 lncRNA upstream 42718 8963752 ~ 8963983 (-) True G222064
TU253540 lncRNA upstream 50442 8971476 ~ 8972335 (-) True G222066
TU253992 lncRNA upstream 64610 8985644 ~ 8987837 (-) True G222412
TU254001 lncRNA upstream 67104 8988138 ~ 8989011 (-) True LOC110520814
XM_021598257.2 mRNA downstream 14138 8811903 ~ 8839679 (-) False LOC110520835
XM_036967926.1 mRNA downstream 14141 8804651 ~ 8839676 (-) False LOC110520835
XR_005040454.1 mRNA downstream 14141 8806782 ~ 8839676 (-) False LOC110520835
XR_005040455.1 mRNA downstream 14141 8806797 ~ 8839676 (-) False LOC110520835
XM_036967919.1 mRNA downstream 14142 8804651 ~ 8839675 (-) False LOC110520835
XM_036963171.1 mRNA upstream 17786 8938820 ~ 8949179 (-) False LOC100136250
NM_001124514.1 mRNA upstream 17789 8938823 ~ 8949165 (-) True LOC100136250
XM_021598296.2 mRNA upstream 52922 8973956 ~ 8982261 (-) False LOC110520856
XM_021598297.2 mRNA upstream 52922 8973956 ~ 8982283 (-) True LOC110520856
XM_036968013.1 mRNA upstream 67050 8988084 ~ 9050862 (-) False LOC110520814
TU253444 other downstream 32750 8818684 ~ 8821067 (-) True LOC110520835
TU253445 other downstream 35603 8817821 ~ 8818214 (-) False LOC110520835
TU253443 other downstream 36108 8804697 ~ 8817709 (-) False LOC110520835
TU253420 other downstream 89933 8763119 ~ 8763884 (-) True G221986
TU253214 other downstream 330609 8503184 ~ 8523208 (-) True G221807
TU253486 other upstream 17862 8938896 ~ 8949187 (-) True G222023
TU254073 other upstream 172146 9093180 ~ 9095136 (-) False G222465
TU254075 other upstream 172842 9093876 ~ 9095216 (-) True G222465
TU254025 other upstream 189939 9110973 ~ 9118373 (-) True LOC110501040
TU254242 other upstream 573762 9494796 ~ 9496853 (-) False G222607

Expression Profile