RNA id: XM_021598296.2


Basic Information

Item Value
RNA id XM_021598296.2
length 1729
RNA type mRNA
GC content 0.53
exon number 9
gene id LOC110520856
representative False

Chromosome Information

Item Value
chromosome id NC_048567.1
NCBI id CM023221.2
chromosome length 85311031
location 8973956 ~ 8982283 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

TGCGCATTGCACGAAGGGATGTTGGCGGACCACCCTCTTTGGTATGCAGGAGGACCGACGTCACTGTTTGTGCTATCCTGGGGAAGATGGCGGAAGCTGCGGCGGTTCCCCCGCATCGGTTCTTCTGTCATTGTTGTAAGGGAGAAGTAAGCCCCAAGCTCCCGGAGTACATCTGTCCCAGGTGTGAGTCTGGCTTTATAGAGGAGGTAACAGAAGATTCCAGTCTGCTAGAGGGTGGCACTAACGGGACAGATGACACAGCCACACAGTTTGCAGAGCAGCTGTGGCACCTGTTGTTTGTAGAGAGGCCTTTCACAGTGGATGGTGACAGTCCAGACTCAGAGCCCCGGGTCCCTGGTGGAGGGGTTGGGGTAGGATCAGGGGGGTTAGGTCTGGGGGGTCTGGGAGGGCTAGGAGGCCTGGGAGGAGGTCCTATCGGAGGGTCAGTCCCTGCTGGGCTAGGAGGACCCCTGGGGGGTCCTCTGGGAGGGGGGGAACACTGGGGGCCCGGTCGCCCCCCTCGCCTGCACAGTCAGCGGAGGTACCGCTCCAGAGGGAGCAGCAGACCTGACCGCTCACCTGCCGTAGAGGGgataGTACAACAGTTTCTGGCTGGTCTATTTGCCAACTCTGGAGTTCCTGGCTCACCTCCCCTCTCTTGgACGGGGATGCTACACTCTAACCCAGGGGACTATGCTTGGGGACAGGGGGGACTGGACGCAGTCATCACACAGTTGTTAGGTCAGTTTGAGAACACGGGCCCTCCTCctgcagagaaagagaagatCTCCTCCATACCTACAGTCAACGTGTCTCAGGATCAAGCAGactGCAGTATGGAGTGTCCGGTGTGCAAGGAGGACTTTGCAGTGGGAGAGCCCGTCAGACAGCTACCCTGCAACCACTTCTTCCACTCAGACTGTATAGTACCCTGGCTGGAAATGcATGATACGTGTCCTGTGTGTAGGAAGGGGTTGAATGGAGAAGACAGCAACACCCAGAACCCCCCAGAATCCCCCTCTCTAAATACGGACCCCCGCACACAGGAGAGATGGTCCTTCTGAAATACACCTCCCCCTCATCCCCTTATCGCACCTCTCTGACCTCCTTTTAATCTCTCTCATCCGTCCTTTATTCCACTTTTTTTACCCTCATCCCCCCCTTCTCTACGAACTACTGCACACGGGAGATAAGGACTTTCTGAAGGATAGACCTCCTCCATCTCTGCCTCATTCCTCCGTGTCATTCCTTcatctcactcctcctctctgaaTCATCTCTTCATCTACAGTCATAGGATGGTCATCTCAGTTTGGCTGTTCCTGTCTCAATGCCCCTGGAACCATGttcacacagagtacacacacacacacacgtcatgatCCATTAGCTGTCCTCTGCCTCATCATGACCAAGCACTTGCCTTTACCTCGCTTCAAACATCAACCACATCTCGCTTTTTCTACTCTTTTCTCCATATTCCTCTTTTTCCATCCTTCTGAAAAGCACTGCTGTAAAACAATGttgtctctccctacctctctactcCTGggatgcatctcaatagtctagtggcttcctctcctcatcaTCTGCACTGAACATGGCAGATGCTCACCAGGAATTTGATTTTGCCTTTCATCATTTTGACTATTGAGACGGGGCCCTCCACAACAATCTTTCGCTGTCATTCTGGTGTATATATTAAACAGATTGCATCGCTCTGTCA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU253540 lncRNA downstream 1621 8971476 ~ 8972335 (-) True G222066
TU253538 lncRNA downstream 9973 8963752 ~ 8963983 (-) True G222064
TU253533 lncRNA downstream 20278 8953424 ~ 8953678 (-) True G222059
TU253498 lncRNA downstream 61646 8852960 ~ 8912310 (-) True G222025
TU253467 lncRNA downstream 170290 8803105 ~ 8803666 (-) True G222009
TU253992 lncRNA upstream 3383 8985644 ~ 8987837 (-) True G222412
TU254001 lncRNA upstream 5877 8988138 ~ 8989011 (-) True LOC110520814
TU254047 lncRNA upstream 69133 9051394 ~ 9051608 (-) True G222442
TU254054 lncRNA upstream 74681 9056942 ~ 9057573 (-) True G222448
TU254057 lncRNA upstream 82299 9064560 ~ 9064848 (-) True G222451
XM_036963171.1 mRNA downstream 24777 8938820 ~ 8949179 (-) False LOC100136250
NM_001124514.1 mRNA downstream 24791 8938823 ~ 8949165 (-) True LOC100136250
XM_021598329.2 mRNA downstream 52898 8912439 ~ 8921058 (-) True LOC110520883
XM_021598328.2 mRNA downstream 52900 8912439 ~ 8921056 (-) False LOC110520883
XM_036967983.1 mRNA downstream 86303 8878988 ~ 8887653 (-) True LOC110520884
XM_036968013.1 mRNA upstream 5823 8988084 ~ 9050862 (-) False LOC110520814
XM_036968044.1 mRNA upstream 119164 9101425 ~ 9118436 (-) False LOC110501040
XM_036968051.1 mRNA upstream 119164 9101425 ~ 9118436 (-) False LOC110501040
XM_036968059.1 mRNA upstream 119164 9101425 ~ 9118436 (-) False LOC110501040
XM_036968026.1 mRNA upstream 119164 9101425 ~ 9118437 (-) False LOC110501040
TU253485 other downstream 24769 8853817 ~ 8949187 (-) False G222023
TU253487 other downstream 24769 8879071 ~ 8949187 (-) False G222023
TU253486 other downstream 24769 8938896 ~ 8949187 (-) True G222023
TU253493 other downstream 52367 8853817 ~ 8921589 (-) False G222023
TU253489 other downstream 52367 8912435 ~ 8921589 (-) False G222023
TU254073 other upstream 110919 9093180 ~ 9095136 (-) False G222465
TU254075 other upstream 111615 9093876 ~ 9095216 (-) True G222465
TU254025 other upstream 128712 9110973 ~ 9118373 (-) True LOC110501040
TU254242 other upstream 512535 9494796 ~ 9496853 (-) False G222607
TU254262 other upstream 548913 9531174 ~ 9551240 (-) True LOC110508584

Expression Profile