RNA id: XM_036968044.1


Basic Information

Item Value
RNA id XM_036968044.1
length 3326
RNA type mRNA
GC content 0.52
exon number 18
gene id LOC110501040
representative False

Chromosome Information

Item Value
chromosome id NC_048567.1
NCBI id CM023221.2
chromosome length 85311031
location 9101425 ~ 9118437 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

CAGTTATTGCTATTAGCCGTGAACGCCATCTTGGATCTAGAAGGTTTCCAAACGGGGAAAATAGATACTTTAATTCTTATTTTGTAATTTCCCCCACTGGCTGATGATGAAGAAACACGAGTCATGACGTCCCCTCTTTATTTGCTGATATAGTTAAAATCGGTAAATCTGAGAGGATTGTGGACTGAGGAAATTTCCGCAGTTTACTGTAACTTGGTTTGTTTATGTTATTCAACCCGGACATGGACTCTTCTATCCCAGacatACCAGATGACTCTCTGGGTTTGGGAGCCGGTGGGGCCCAGGCAAGCAGCAGTGCTGTTGTGCCAAAAGGGTCCAATAAGAGACGAGCTGCGCCAGActtcgatgatgatgatgatgatgatggaagCAAGCTCTTCAGATCTTCTTCTCTGTCTTTGACCAGGTGTGATGacgatggaggaggaggagacaaagaGCGATTTGCCAGGGAGAACCACAGTGAGATTGAGCGGCGGCGGAGGAACAAGATGACTGCTTACATCACAGAGCTGTCAGACATGGTTCCCACCTGCAGCGCGTTGGCACGGAAACCAGATAAGCTGACCATCCTGCGCATGGCCGTGTCCCACATGAAGTCTCTGAGAGGGAGCGGCAACACTGCAGCAGACGGGACATACAAACCATCCTTCCTCACCGACCAgGAGCTGAAGCACCTGATCCTGGAAGCTGCTGATGGCTTCCTGTTTGTGGTGTCGTGTGAGAGTGGACGGGTCGTCTACGTGTCAGACTCCCTGACCCCTGTTCTTAACCAATCACAGTCTGACTGGCTAGGCTCCTCACTCTACGACCAGCTCCACCCGGACGACGGAGACAAACTACGAGAGCAGCTCTCTACTGCAGAGAGTAACAATACAGggaGGATGTTAGACCTGAAGACAGGAACAGTTAAGAAGGAGGGACAGCAGTCCTCCGTCAGGATGTGTATGGGAGCCAGACGATCTTTCATATGTAGGATGAGatgtgGTTCGTGTCCAGTGGAGCCCATGTCTATGAACAGATTGCATTTCCTGCGGAGCAGGAACAGGAATGGTCTGGGCCCACCCAAGGATGGAGAGCCTCAGTATGTGGTGGTCCACTGCACTGGATACATCAAGTCCTGGCCCCCcacagGGGTGAATCTAACAGATGAGGAAGCAGACAATATTCAGGGGAGTCGCTACTGTCTAGTCGCCATCGGTAGACTTCAGGTGACCTCTTGCCCGAGCGACACAGACATAAACAGCATCAGCGTTCCGGTGGAGTTCATCTCTCGTCACAACTGCCAGGGCCTCTTCACCTTCGTAGACCACCGCTGCATGGCCACAGTGGGCTTCCAGCCTCAGGAACTGCTGGGTAAGAACATCTTGGAGCTGGCCCACCCTGAGGACCAGGAACTGCTGAGAGACAGCTTCCAGCAGGTGGTCAAGCTGAAGGGTCAGGTGCTGTCCGTCATGTTCCGCTTCCTGTCCAAGACCAGAGACTGGCTCTGGATCAGGACCAGCTCCTTCACCTTCCAGAACCCCTTCTCTGAGGAGATAGAGTACATCATCTGTACCAACGCCAATGTCAAACAGTTGCAGCAGCAGCAAGCAGAgttggggggaggagggagagatggtctGTACGAGGCAGGACAGGTTACACTTCCACAGATGCCTGTCCAGGCCGTGACCGCAGCTGGAACTGACCACAGTAAGACCATGGACAAAGCAGAGATGCACCCCTCCATGTACCCCAACCCAGACCAGGCCAAGTTCCTGCCCTCCACCTCTGCCACCGGAGTACCCATCTACCCTCAGGACAACAACAACTACACCACTGCCAACCGCTCCAACGACACATACAGCAGGTCAGTAGGGATGGCCCCTCAGATGGTGCAGCCATCCCACTCCGCAGGCCAGGTGCTGGCTCAGATGTCCCGTCAGAACGGGGCACCCCCCTCCAACAGCAGCCCCCTACAGGGAGGGGCAGCGGTGAGCTGGCCGGGGCCAGCAGCAGGGGCTAGACCCCCCTTCAACAACCAGCAGGTGGTGCCCCAGGCAGGGAAGGCCCTGTCTCCCCAGTTTGCCATGGGAAGTTTTGTTGGGGGCTCTTCCTCCTCATTTGGGGCGATGCCCACCACTGCTGCTCCGACCCCCACCATGGGGGCTAACTACCCAAATATCAACCCCCGCGCCAGCCTCAATTCCAACGGATATGATGGCTTGGGGTCGGGGCAGCAGTTCCCCTCCAGGGCAGTGGAGGCAGTGTGGCCCCAGTGGCAGGGCCAGCAGCaagctcagaacagggcagagcaGCACCCCCACACACAGAACAACCAGCCTGACATCTTCCCTgatgttCTCGCCATGCTGGACCAGCCAGCCAACTTCAACAACGATGACTTTGAGATTCCCATCTACCCCTCTTTCAACGAGTGACCTCACATACACTCTTCCACTtacctcctctgtctctcaaatgtctccttctctctcatttgGTGCACTTTGCTCTCTTTCTTTGCCTGTCGTGATCCAAAGAGAGCATGTCTAATTATCGCTCAGATGATTGCACTGCCAGGATGGAGAAAGCGAGTTAATcagggaaaagagagagtgaaatcAAGTTTAGGTATGCAAATGCAGGTTCAATAAGCAcgtgaaagggggagagagagagaagagattcaGGGTTCAGCGATAGTTGTGCAAATGTAAAATGACATCTGTAGCTAGCACTGCCCAAGCTCCACAGCCAGTGGATTTGTTGTAGAGATGTAACACACAATCCCACCTGAGCATGCACAAGGCCCTGAGGCAGGCACTGCTTCACCAGTAACACACAAACATGGCCTTTCACTAACCGAGTCAGCTGTGTGTTTAGATCTATGCTGCTCCACTGGTCTGTACATCATATGGATAGATCAGTCCAATCATTCACTTGAAGCCTCAGGCAATCCAGGTGATCTACAGCTTTGGGGGAATAtgtgggaatatatatatatgggaaTATTCTGATCTGAAGCCTGTGAATATCCTCTATCTGCTCCCCTCGCTGTTTTAGCTTAGCGACCCGTAGCATGTTCAAAAGGACACTGTCCTCACGCAGGCAGATTTATACCAACACTGTACAAACACTTTTATATTTCTACATTGACGATGTCACCTAACAATGTGGTTATGGTGGTTTCAggtggaaaagagggagagatgtctatgactagtgagggagagatggggagagatgtctatgactagtgagggagagctggagagagatgtctatgactagtgagggagagagagatgtctatgactagt

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU254024 lncRNA downstream 2427 9097963 ~ 9098998 (-) True G222425
TU254072 lncRNA downstream 8303 9092358 ~ 9093122 (-) True G222464
TU254061 lncRNA downstream 27599 9073608 ~ 9073826 (-) True G222455
TU254036 lncRNA downstream 28807 9071936 ~ 9072618 (-) False G222435
TU254037 lncRNA downstream 28807 9072161 ~ 9072618 (-) True G222435
TU254011 lncRNA upstream 404 9118840 ~ 9121329 (-) False G222423
TU254012 lncRNA upstream 404 9118840 ~ 9121329 (-) False G222423
TU254013 lncRNA upstream 404 9118840 ~ 9121329 (-) False G222423
TU254014 lncRNA upstream 404 9118840 ~ 9121329 (-) False G222423
TU254015 lncRNA upstream 404 9118840 ~ 9121329 (-) False G222423
XM_036968013.1 mRNA downstream 50563 8988084 ~ 9050862 (-) False LOC110520814
XM_021598297.2 mRNA downstream 119142 8973956 ~ 8982283 (-) True LOC110520856
XM_021598296.2 mRNA downstream 119164 8973956 ~ 8982261 (-) False LOC110520856
XM_036963171.1 mRNA downstream 152246 8938820 ~ 8949179 (-) False LOC100136250
NM_001124514.1 mRNA downstream 152260 8938823 ~ 8949165 (-) True LOC100136250
XM_036968074.1 mRNA upstream 3786 9122222 ~ 9149197 (-) False LOC110500119
XM_036968084.1 mRNA upstream 3861 9122297 ~ 9146453 (-) False LOC110500119
XM_036968088.1 mRNA upstream 3861 9122297 ~ 9146864 (-) False LOC110500119
XM_036968081.1 mRNA upstream 3861 9122297 ~ 9150991 (-) True LOC110500119
XM_036968109.1 mRNA upstream 42547 9160983 ~ 9222948 (-) False LOC110508553
TU254075 other downstream 6209 9093876 ~ 9095216 (-) True G222465
TU254073 other downstream 6289 9093180 ~ 9095136 (-) False G222465
TU253487 other downstream 152238 8879071 ~ 8949187 (-) False G222023
TU254242 other upstream 376360 9494796 ~ 9496853 (-) False G222607
TU254262 other upstream 412738 9531174 ~ 9551240 (-) True LOC110508584
TU254285 other upstream 443309 9561745 ~ 9562965 (-) True LOC110520821
TU254309 other upstream 499189 9617625 ~ 9622934 (-) False G222662
TU254332 other upstream 554007 9672443 ~ 9673439 (-) True LOC118944443

Expression Profile