RNA id: TU254057


Basic Information

Item Value
RNA id TU254057
length 289
lncRNA type inter_gene
GC content 0.37
exon number 1
gene id G222451
representative True

Chromosome Information

Item Value
chromosome id NC_048567.1
NCBI id CM023221.2
chromosome length 85311031
location 9064560 ~ 9064848 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

GGGTTGATCTATGCTTTTACTAATGCCTCTTTAAGGTCTACAGACTCTATTTAATTTGGCATTTCCCATATATTCACTGACACCATATGAAACCCCTCCCTTAGTCTCATAGGAACAATCTCACTGCACCATTCTCCACTTctgtcccgtctctctctctctctctctctctctctctcaattcaattcaattcaattcaattcaagggctttattggcatgggaaacatgtgttaacattgccaaagcaagtgaggtagacaacatacaaagttaatatataaagtga

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU254054 lncRNA downstream 6987 9056942 ~ 9057573 (-) True G222448
TU254047 lncRNA downstream 12952 9051394 ~ 9051608 (-) True G222442
TU254001 lncRNA downstream 75549 8988138 ~ 8989011 (-) True LOC110520814
TU253992 lncRNA downstream 76723 8985644 ~ 8987837 (-) True G222412
TU253540 lncRNA downstream 92225 8971476 ~ 8972335 (-) True G222066
TU254059 lncRNA upstream 3985 9068833 ~ 9069221 (-) True G222453
TU254034 lncRNA upstream 7088 9071936 ~ 9072552 (-) False G222435
TU254036 lncRNA upstream 7088 9071936 ~ 9072618 (-) False G222435
TU254035 lncRNA upstream 7313 9072161 ~ 9072552 (-) False G222435
TU254037 lncRNA upstream 7313 9072161 ~ 9072618 (-) True G222435
XM_036968013.1 mRNA downstream 13698 8988084 ~ 9050862 (-) False LOC110520814
XM_021598297.2 mRNA downstream 82277 8973956 ~ 8982283 (-) True LOC110520856
XM_021598296.2 mRNA downstream 82299 8973956 ~ 8982261 (-) False LOC110520856
XM_036963171.1 mRNA downstream 115381 8938820 ~ 8949179 (-) False LOC100136250
XM_036968044.1 mRNA upstream 36577 9101425 ~ 9118436 (-) False LOC110501040
XM_036968051.1 mRNA upstream 36577 9101425 ~ 9118436 (-) False LOC110501040
XM_036968059.1 mRNA upstream 36577 9101425 ~ 9118436 (-) False LOC110501040
XM_036968026.1 mRNA upstream 36577 9101425 ~ 9118437 (-) False LOC110501040
XM_036968035.1 mRNA upstream 36577 9101425 ~ 9118437 (-) False LOC110501040
TU253487 other downstream 115373 8879071 ~ 8949187 (-) False G222023
TU254073 other upstream 28332 9093180 ~ 9095136 (-) False G222465
TU254075 other upstream 29028 9093876 ~ 9095216 (-) True G222465
TU254025 other upstream 46125 9110973 ~ 9118373 (-) True LOC110501040
TU254242 other upstream 429948 9494796 ~ 9496853 (-) False G222607
TU254262 other upstream 466326 9531174 ~ 9551240 (-) True LOC110508584

Expression Profile