RNA id: TU254035


Basic Information

Item Value
RNA id TU254035
length 392
lncRNA type inter_gene
GC content 0.50
exon number 1
gene id G222435
representative False

Chromosome Information

Item Value
chromosome id NC_048567.1
NCBI id CM023221.2
chromosome length 85311031
location 9071936 ~ 9072618 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

tccattcatAGCGCAACCGCTCATAACGTGCACTGACGCATAGGCGAGATAGGgatcagcgagagagagacagagagagggttggattagGGCACTCACAGCCACCTCAGTCAAACAGTTGAGAGACACACGGTCACAACCTGCTGAGGGGGCAAAACTAACGGGACCGGAAAGTCTAAATCCAATCCAGATCACCTCTTAACCGGTTAGGGAGAGGGGACCACCGACCACCTCGAGACCCCGCACTGATTGAAAAGAGGGCAGAGTTGGAGAGTAAAACAATCCGTTTTGAAAAATTATTCAAATTGATCTATCCAGCCACCCTATACTCTGAACCATGGAGCGCAAAATCCCTGACTTCGCTGGTACCTGGAAGATGAAGAGCTCAGAGA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU254059 lncRNA downstream 2940 9068833 ~ 9069221 (-) True G222453
TU254057 lncRNA downstream 7313 9064560 ~ 9064848 (-) True G222451
TU254054 lncRNA downstream 14588 9056942 ~ 9057573 (-) True G222448
TU254047 lncRNA downstream 20553 9051394 ~ 9051608 (-) True G222442
TU254001 lncRNA downstream 83150 8988138 ~ 8989011 (-) True LOC110520814
TU254061 lncRNA upstream 1056 9073608 ~ 9073826 (-) True G222455
TU254072 lncRNA upstream 19806 9092358 ~ 9093122 (-) True G222464
TU254024 lncRNA upstream 25411 9097963 ~ 9098998 (-) True G222425
TU254077 lncRNA upstream 34958 9107510 ~ 9107836 (-) True G222467
TU254011 lncRNA upstream 46288 9118840 ~ 9121329 (-) False G222423
XM_036968013.1 mRNA downstream 21299 8988084 ~ 9050862 (-) False LOC110520814
XM_021598297.2 mRNA downstream 89878 8973956 ~ 8982283 (-) True LOC110520856
XM_021598296.2 mRNA downstream 89900 8973956 ~ 8982261 (-) False LOC110520856
XM_036963171.1 mRNA downstream 122982 8938820 ~ 8949179 (-) False LOC100136250
XM_036968044.1 mRNA upstream 28873 9101425 ~ 9118436 (-) False LOC110501040
XM_036968051.1 mRNA upstream 28873 9101425 ~ 9118436 (-) False LOC110501040
XM_036968059.1 mRNA upstream 28873 9101425 ~ 9118436 (-) False LOC110501040
XM_036968026.1 mRNA upstream 28873 9101425 ~ 9118437 (-) False LOC110501040
XM_036968035.1 mRNA upstream 28873 9101425 ~ 9118437 (-) False LOC110501040
TU253487 other downstream 122974 8879071 ~ 8949187 (-) False G222023
TU254073 other upstream 20628 9093180 ~ 9095136 (-) False G222465
TU254075 other upstream 21324 9093876 ~ 9095216 (-) True G222465
TU254025 other upstream 38421 9110973 ~ 9118373 (-) True LOC110501040
TU254242 other upstream 422244 9494796 ~ 9496853 (-) False G222607
TU254262 other upstream 458622 9531174 ~ 9551240 (-) True LOC110508584

Expression Profile