RNA id: TCONS_00029361


Basic Information

Item Value
RNA id TCONS_00029361
length 5718
RNA type mRNA
GC content 0.38
exon number 4
gene id XLOC_014878
representative False

Chromosome Information

Item Value
chromosome id NC_007130.7
NCBI id CM002903.2
chromosome length 48449771
location 30517311 ~ 30565122 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

GCAAGGGAAACGTAACCGCTCCATTCATCCTCCTCATCACAGGGAAGAAACAAATAGGTGGCGTTTCTCTGTTGAAGTACAGTTTACTCCTCCAACCGCGAGAGTACAAGTCActttgagaaataaataaaacagcggATAGTTTTCTCACGATATTTGGTGAGGTGTAGAGATGGGAAAACACAACAGCAAGCTGGCTCCTGAGGTGCTAGATGACTTGACCAAGAGTACAGAGTTCAATGAAGCCGAGCTGAAGCAGTGGTATAAAGGATTCCTGAAGGACTGTCCATCTGGCATCCTCAATCTGGAAGAGTTCCAGCAACTCTATGTGAAGTTTTTCCCTTATGGAGATGCTTCAAAATTCGCCCAGCATGCCTTTCGGACATTTGACAAAAACGGTGATGGTACCATTGACTTCAGAGAGTTCATCTGCGCGCTGTCCATTACTTCCAGAGGAAGCTTTGAGCAGAAACTAAACTGGGCTTTCAACATGTATGATCTGGACGGAGACGGTAAAATCACACGCATGGAGATGCTGGAGATCATTGAGGCAATCTACAAGATGGTCGGCACAGTGATCATGATGCGTATGAACGAGGATGGTCTGACCCCACAGCAGCGCGTGGACAAAATCTTCAGCAAGATGGACAAGGACCACAACGATGAGATCTCACTGGAGGAGTTCAAAGAAGCGGCCAAAAGCGACCCCTCCATTGTGCTTTTACTGCAGTGTGACATGCAGAAGTAAGAAAGGAAAGCAGGAGAACGAGTTAAGAGGGTAGGAAGGAGTGGAGAGCCATGTACAGACTTCTAGAGTGAGATTTAGGCCATAGATGATGAGAGAATATGTACATACAGATGAACAGAGGTTAGACCGCACGGTAATCTAAGGAAACGATTATGGGAATTTGGAATGATTAGTCGAAGTAATGCAAGAAAGAGTCTTTTTCCACCCTCTATTACTTGTTACACATTCTGTCAGCTTTCCAGCCTCTAGAGAGAGAGTCAGAACAAGACATTTTCTTCCTCGAAAAGGTCACTTTCGTGCCGATAGATCAGATTTTCCATCAGGATTTAAAGCATACGATTGGGCAATTTGATAACtagtacatttacatttgataattagttcaaaatcaaacaaagatgaaattttttttagtatttttaggcCTGACTTATATAGAGAGATGCACGATATACTGATAAAATACTGGCAAACAGTCAACATTtgctcatttgatttattttttattatttattggttgatattatttttataatagccTGTTTAGTGCATATTTAATGCTCATTTTCCCTATTTTTTCATTCAAATGATCTTTTCTGTCATCTAACAGTCACTTGTTTTATGTAAACACTAAAGCCCATTTCATACCAAGAACGATAACTGTAAAGATAACTATAATGATGCTTGACTATATTAGCATACAATGCTCAATGTTGTGCTGTGTGTTATGTGTACATAAGCCTATCGCTTTAAATGCTCAAGCTTTTTAACAATGGTTGGTAACTAATTGGCTGTCGCTGTTTTTATTTCTCATCAGCTTGAAtgctttgcatttttgttttggtgtggagtgtgttatttattttaattttcatcaAATCTTTATTGTTGGTTACCGTTTCTTAATGTGAACAGACTTTAGGAGCTTAACCTCAATCTTTACTATTTTTCAATCCATATATTATTATGTTCTTATGTCTAAACTCACCTGTACGATTTATTTTTTAcgaggtttttttttattcagaaaaaaatataattaaattaatatgatTCAAGCACTTTTGAGATCATAAATATAACAAATTTCAATATGAAATGCTTATTAGCCATCAAAATCTGCTTATCATTGCCGCCAAATGCTCATACTGTGTATCTCTATTAAATATGATAGaatatagaatttatttatttttttgtccacaCTGAAAATGTCAAAGTGTGCCTGAGGAAGAACATTAGAGAGTGGAAATGCATTCAGGAGTCCTTTGACATTTGTGGGTGCCTTCATATACAGTACAACTGCATAACcactacagcaaaaaaaaaaaaaaatcctgtcacATCAGTGTGTGACGATAACCATCACTAACAATATCCATCTTCTAATCATGTTATTGGCCGAGATAAAGCTTAAAAGCCAAGGCGAAGTAAAAGGGTGAAGCCAGAAAACGAGGAGTAGCTTTTATTAGCTAGAGAACTGACAATGTATATGATGACATTTTGTACATAATGCTTATACACATGCTTAAGATGTACATGTAAATGTTTCTCTACCTTAGAACTGCTTTCATAATCTGACACAGCTGCAACGACTTGTGTGCAAACACAAAAACTACTGTACTTGTGCGTGTGGATGAGGGAAactaaaaatgtgtgtgttttcttcactGTAATTTGGCGTGAAagccgcagtgtgtgtgtgtgtgtgagagagagtgcgCGAAAACACAAATGCCTCAACCTTTGTATTAATTCTTTCTTATGATCTTCACGCCAGTGCTAGGAGTATTAAGCCGTTGTGTTCGTCGTTACCTGGTGTGGCCtttttgtgtgtgcgtctgtgtaaGGAGAGCTTTAGCTTTCGGTCATCTTATTTCACAAGCTTAGCAGGTGTCAGTAAAGAGGATTTTAACTGTATGAATATCGTCAATGTCGAAATATTTTCTTTACTCTTGTAATATAAGTGGACGCAAATGTAAACCAGACGCAGAATGTGTAGTACTTCTTGTAAATGTTACTATGCCGCAATACTAACACGAGAATACTGTCCGTTGCACTAAACAGACACAGCTTTAGTTTTAGACTGCCTCCCTGTGGTGAAAGATGATAACTTCGAGATCAGACCTTCAAATATTATGATTTTTCAGGGCCCTCAGGACCTGATAAGGCCCAGTAATAATATTCCCTCATAGAGTCCAGTGGAAAGCTATCCCTTGAATAAAATCTATCAGTAAAAAAGCCCTCAGAACCATAACATACTGTCAAAGATGTGCTACTGTACCAATGTGCTACTCAAAAGCAATGATTACATGTTTAGTCATGTTTTAAGCTCTATCTGAGTGACTTTTTTCTAAATAGGAGGTTGTAGCAATATTTCAAGATCCTGTGATTTTTCATCTTCAGTAACAGCAGTTTCTGTTCTTGCCTGTCAGCACATTTTGTCACAACTCCTTTAACACTACTTGTACTTTTGTAGAATCAGTGTGGTGTGTGTTTGctatcacattcacacacgtCTGCTGCTTAGGTGTAAACTCTTGCTTATTTTGTCACAAAGTAGCTTATACTTTGTTGAAATGCACCCTTATGAAAAAAGAAGTGTACTTAGTGTACTTTGAatcttatatttaatttttaacctATAGATAATATAAATGTTATGAATTGAAAGCCCACTAAAGTGGATTTTGAAGtgcaaatatttttgttaaattacaattttacgttaaattaacttgttttattttattttgatgtgttGACTAATATACTAAAGAAACACGCAGAGCACTTGAACATTTTAACTGtgttatttgtaattaaattcCGATTTTAATTTTTCACACTTTATACCAAATGTGTGAGTTAAAATCACATACAAGTTTCAGCAGTTGATCATAAATGCTTGTTGATACGTTGTGCAGTACAcctaaatcacattttaaaaatgcaagaaAATACATATGTATATGAAATTAATTAAGTGGTACTGATGTGGGTCAAAAGTTCATGTAATTGCAATCATAATGTGATAACATGtatagtgtaataataatattattgtataattTCATACTTCCCCTCAAATAAAGTCtccaaaataatataatttctgaaaagtcaaatgtttttattattattattattatttaatgcaatgtgtatttatttataaagcgcatTTATTGTCTATCGTCATAAACCAAAAGtgtttcacaatcatgagggggtctctccacaccaccaccagtgtgcagcatccacttgaatgatgtgACGGTAGCCAAAGGGCAATggtgccagtgtgctcaccacacaccagctatacaGTAGGTGGCGTGGATAGACAGTGATAGAAACAATTCAGTGGATAGGgaggattgggaggccatgatgggtaagggccgatggagggaatttggccaggacactggggtaaCAAACCCACTCCTTACAAGAAGTtcaatgggatttttaatgatcacagagggcatacctgccaacacttgtCTCAGAAAatccgggagaaataacaaaacgggagggtggcgggaaatgggtctgaaatacgggagactcccaggaaaaacaggagtgttggcaggtatgacagagagtcaggaccaaGACATTGCTCATTCACAATACAGTATCTCCTTCactacactggggcattaggactctgctggcctcactaatgcCACTTCCAACagaaacctagttttcccatgtggtctcccatccaggtactgaccataGGCTCAGCCCTGATTAGCTTCAGCGAGTAACCGAtcttgagctgcagggtgatatgactgccacctattattattattattattattattattattattattattattattattactgttgttgttgttattatgatgCTACAGTACTGTTCTTTTTCCACAAGGGTCACTCAAGTTTCACTGTCTCTGCAATTCAAAAACTGTAAAAGAGTTACTCAATGTATGGTCTGCACTCTTTCGAACTGACCATCTCTGGCTATTTAATGATCACTATGATTAGATTACATAAACCCAGTAATGGGCATGGGTAATGATTATGGGAAGTGCAAAATGGGTCTTGGATGTTGTGCAATGTGCTGATCAGCCACTAAATCGACTCCATACATGCCACTGCTACAGTCCAATATGAGATTTTGTGTGCCAAAGACTTTATGAAACGTAGAATTAGACACTCGCGTATATAATGACGTTCTGAACTtgattgcatttacatttatattacagCCTGAAAATAAATTGTATGTAAGTTGGTCACATTCGACTTCAGATTATGTCCCCAAACGACGCTAAAAAGGGAATAATGGTGCCCAATCGTGCAATACAATGCtttctgtactgtatgtgtgcttTGCATTTCTAAATGTCTGGTTTCTGTTCACTTTTTTCAATATCGTAAAGCTCCTTGAACAAAGACGTGTAATTATTTTTGTTACATAGAGAATTAAATATGTGGATGTCTACTGAATGGTCTCCggctgtgtgtgttgtttgtcgTCTTTACTGATTAGGCAAATGCTGTCAGACAAACtcatttatttctctctctctctctctctgttgcaCATAGACTGTTGAGTTTTTATGCAGACCTGCGCAGTGTGAGTCACTCCAGGGAGGTGATGTCATCATAAATGCTGTTGTCATGGCAGCGGGGCTGTAGCACATCTGAACTGAAGGGAGAATTGAATGAATGCAGAGCTTCCATCAGGGACACACATTTTTTTGCATTCAATTTGCCAACAAATCGATGTGTTCATCCTTTAAGCTAGCTGTTAAGGCTGTGCCACTGGTTTGTGCAAGCCTGTGGACATCTCACTTAAAACAAAGTTGTTGAAAATGAACTTGGTTATGTGCACTGTAAAGCATAGGTTAAGCTTCGTTTGAAGAAACTGATTGCGAGAAACCGTTTAAGTTTTGAAACCAAATagt

Function

GO:

id name namespace
GO:0007165 signal transduction biological_process
GO:0005509 calcium ion binding molecular_function
GO:0005246 calcium channel regulator activity molecular_function

KEGG:

id description
ko04990 Domain-containing proteins not elsewhere classified

ZFIN:

id description
ZDB-GENE-060503-307 Predicted to enable calcium ion binding activity. Orthologous to human HPCAL4 (hippocalcin like 4).

Ensembl:

ensembl_id ENSDART00000171006

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00030292 lncRNA downstream 46810 30469970 ~ 30470501 (-) True XLOC_014876
TCONS_00029342 lncRNA downstream 162956 30347509 ~ 30354355 (-) False XLOC_014872
TCONS_00030291 lncRNA downstream 165175 30347509 ~ 30352136 (-) False XLOC_014872
TCONS_00030290 lncRNA downstream 201168 30312845 ~ 30316143 (-) True XLOC_014871
TCONS_00030288 lncRNA downstream 216577 30271204 ~ 30300734 (-) True XLOC_014870
TCONS_00030293 lncRNA upstream 29671 30592319 ~ 30623732 (-) True XLOC_014879
TCONS_00030294 lncRNA upstream 158364 30721012 ~ 30722504 (-) True XLOC_014880
TCONS_00029791 lncRNA upstream 268542 30831190 ~ 30835097 (-) True XLOC_014883
TCONS_00029371 lncRNA upstream 400075 30962723 ~ 30965661 (-) True XLOC_014885
TCONS_00029413 lncRNA upstream 2062108 32624756 ~ 32632138 (-) True XLOC_014907
TCONS_00029359 mRNA downstream 6381 30475281 ~ 30510930 (-) False XLOC_014877
TCONS_00029360 mRNA downstream 6381 30506050 ~ 30510930 (-) True XLOC_014877
TCONS_00029358 mRNA downstream 7007 30475281 ~ 30510304 (-) False XLOC_014877
TCONS_00029357 mRNA downstream 7007 30475281 ~ 30510304 (-) False XLOC_014877
TCONS_00029356 mRNA downstream 7052 30475281 ~ 30510259 (-) False XLOC_014877
TCONS_00029365 mRNA upstream 160119 30722767 ~ 30800004 (-) False XLOC_014881
TCONS_00029364 mRNA upstream 160119 30722767 ~ 30800004 (-) False XLOC_014881
TCONS_00029366 mRNA upstream 170673 30733321 ~ 30800082 (-) False XLOC_014881
TCONS_00029368 mRNA upstream 242865 30805513 ~ 30811161 (-) False XLOC_014882
TCONS_00029369 mRNA upstream 244345 30806993 ~ 30810328 (-) True XLOC_014882
TCONS_00029352 other downstream 85561 30429332 ~ 30431750 (-) False XLOC_014875
TCONS_00029343 other downstream 167113 30349303 ~ 30350198 (-) False XLOC_014872
TCONS_00029339 other downstream 644196 29861859 ~ 29873115 (-) False XLOC_014868
TCONS_00029333 other downstream 732099 29785095 ~ 29785212 (-) True XLOC_014865
TCONS_00029320 other downstream 2075351 28441841 ~ 28441960 (-) True XLOC_014853
TCONS_00029367 other upstream 190161 30752809 ~ 30799963 (-) True XLOC_014881
TCONS_00029373 other upstream 437185 30999833 ~ 31007417 (-) False XLOC_014886
TCONS_00029380 other upstream 516678 31079326 ~ 31081251 (-) False XLOC_014888
TCONS_00029381 other upstream 517530 31080178 ~ 31083973 (-) True XLOC_014888
TCONS_00029389 other upstream 1020604 31583252 ~ 31584401 (-) True XLOC_014894

Expression Profile

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Homologous

species RNA id representative length rna type GC content exon number chromosome id location
grasscarp (Ctenopharyngodon idella) TU264679 True 117 TUCP 0.47 1 CI01000054 8305937 ~ 8306053 (+)