RNA id: TU305033


Basic Information

Item Value
RNA id TU305033
length 1589
lncRNA type inter_gene
GC content 0.37
exon number 1
gene id G268467
representative False

Chromosome Information

Item Value
chromosome id NC_048567.1
NCBI id CM023221.2
chromosome length 85311031
location 49791748 ~ 49794617 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

GTCTTTTTACTGGGGTGGGGGTGCAAAGAAAAGCGTTAAATGTGGTTCCAATACATACGCACTGAAATGCCTTATTTTCTATCATATTGTGGAGTTGAAAAGGGGGGAACGGTGCATAGTTATTAAGCTACTGTCGATTGTTTAAAGGTTTGAGTTAAATGTGTGTTAAAAAAAATGGCATAGAAATGAAGCGATTGGCTATTGCCAGCCTAAAACCCTTGTTACGTTTTTTTGATGACAGCCATGGATAGGTCTGTGTCaaaatcctttaaaaaaaaaaacattagtaCGGTCTTCCTGATTTATGTTTGTGTCATATTTGTGCTTGCCTAAAACCATCAGCAAGCTTTACCCACATCCCGCTCCGTTGCATCCTGAATAATATCGCAGATGGCAAAAAGAAAACAATGGCATATTTAAAATGTTGTATAATAATTTCTATTGAACTTCTACAATTGATCGGATGTTGTAATATGCATTTCTTGCAAATCAAGTATTTTTAATGAACAGCTATATCATCGTAAACTGGTTTTATGGTATCTCAAACTCCAAGCTCTTTAAATGGCTTTTTaaatgtgtatagtgtaatatTCAGATGTGTTTATTTTGTAAAAACGTGATTTCTAAATGACTCACAATTTAGAAAGTCGAGTCATttttagaaagaaaaaaaaaagaagccatGCTAAGGGGTTGAATTGCCAAATTTGACTTTAATCTCAGGGTGACTTGGTCATGCACGGTAGAACAATCCTCCCCTGTAGCCCCTAGAGATGTTGTGGGGTGTTGTGTAGAGAGGTGTTATTCGATGGACCAAAAGCATAGTTGGAATTATGCTGTCACCGTGTTACCTATGCTCTATAAACTGTATGTCAGGGTCCTTAGATGACAACCCCCACCCCCCTTACCTTTATGAAATAGTTCGGTAAAGAGATGCGCTCTGTGTCTGCGCCTTGCTCAATCAGCCCTCTAAGACAGAAGTGAAGTGGTATCGCACGAGGCAGTACTCTCTTAATAGCACTCTTCTCTTCATCTGTAGTTTGATCATTCCCTTTTTGTTTAAACGTATTTGTATACTGCCCATGATGGTTATCCTCGTTTATTTTTTGTCAgtaaatgtttctgtctctgtcttattTCTTTTAATCGGAGTGTTATTTTGACTCCCTTTTCTGTAGTAATATATCTATGTTATTATTCAGATTATGAAATGTAAGATTGAAGAAAGTGAATTGTGCGCATTGTATCTGCTGTTGTAGTGACTGGTTCTGGGAAGTTGTCTTCAACTCagaaggccccccccccccccccagtggctTTAAGTCCACCATGATATCATTGAAACGTATTATACCCTGTGTGGTCATTAACAAAACACTATATTATACCTCACAGATTCACGTTTAGAAGTGAACATGTAATTTTTACAATCTCAAAAAGTTTCAATCCAGATGTTTGTCGTGGATCATTATAAACATGTTTGTAACGTGGTATTCATTTCATTGATTTTATTCTGTTTTGAGGGAAACAATTGTACAATGTCCACTTTTTGAGGGTATCTTGTTATTTCATACAAAAATGACTAAACA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU305023 lncRNA downstream 53298 49738222 ~ 49738450 (-) True G268462
TU305018 lncRNA downstream 60401 49730949 ~ 49731347 (-) True G268457
TU305020 lncRNA downstream 63610 49727737 ~ 49728138 (-) True G268459
TU305019 lncRNA downstream 64092 49726154 ~ 49727656 (-) True G268458
TU304988 lncRNA downstream 82675 49679007 ~ 49709073 (-) True G268428
TU305032 lncRNA upstream 172 49793508 ~ 49794617 (-) False G268467
TU305034 lncRNA upstream 172 49793508 ~ 49794395 (-) True G268467
TU305074 lncRNA upstream 11641 49804977 ~ 49805179 (-) True G268501
TU305075 lncRNA upstream 13072 49806408 ~ 49806670 (-) True G268502
TU305030 lncRNA upstream 85775 49879111 ~ 49881820 (-) True LOC110520120
XM_021597166.2 mRNA downstream 183634 49563841 ~ 49608114 (-) False LOC110520112
XM_021597167.2 mRNA downstream 183634 49563841 ~ 49608114 (-) False LOC110520112
XM_021597168.2 mRNA downstream 183634 49565035 ~ 49608114 (-) False LOC110520112
XM_021597169.2 mRNA downstream 183634 49565035 ~ 49608114 (-) False LOC110520112
XM_036964921.1 mRNA downstream 288723 49494001 ~ 49503025 (-) False LOC118944672
XM_036974439.1 mRNA upstream 1321 49794657 ~ 49802026 (-) False sp3a
XM_021597182.2 mRNA upstream 1333 49794669 ~ 49802026 (-) False sp3a
XM_021597183.2 mRNA upstream 1333 49794669 ~ 49802026 (-) False sp3a
XM_021597185.2 mRNA upstream 1333 49794669 ~ 49802026 (-) False sp3a
XM_036974441.1 mRNA upstream 1333 49794669 ~ 49802026 (-) False sp3a
TU304905 other downstream 224274 49563848 ~ 49567474 (-) True LOC110520112
TU304903 other downstream 225759 49563848 ~ 49565989 (-) False LOC110520112
TU304858 other downstream 288777 49502416 ~ 49502971 (-) True LOC118944672
TU304852 other downstream 295945 49495477 ~ 49495803 (-) True G268310
TU302595 other downstream 1758446 48032047 ~ 48033302 (-) True LOC110505248
TU305027 other upstream 73881 49867217 ~ 49871645 (-) True LOC110520119
TU305117 other upstream 106837 49900173 ~ 49901538 (-) True LOC110520121
TU306341 other upstream 646869 50440205 ~ 50442872 (-) True LOC110520139
TU306786 other upstream 1335104 51128440 ~ 51129310 (-) True LOC110520160
TU307414 other upstream 1679988 51473324 ~ 51474139 (-) True fgf9

Expression Profile