RNA id: TU305030


Basic Information

Item Value
RNA id TU305030
length 2675
lncRNA type sense_over
GC content 0.44
exon number 2
gene id LOC110520120
representative True

Chromosome Information

Item Value
chromosome id NC_048567.1
NCBI id CM023221.2
chromosome length 85311031
location 49879110 ~ 49895110 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

ctctgtggagatgggagaaccttccagaaggacaaccgtctctgcagcactccagcaatcaggtctttatggtagtggccagacggaagtcactcctcagtaaaaggcacatgacagaccgcttggagtttcccaaaaggcacctaaaggactctcagaccatgagaaacaagattctctggtctgatgaaaccatgattgaactctttagcctgaatgtcaagcgtcacgtctggaagaaacctgccatcatccctacagtgaagcatggtggtggcagcatcacgctgtggggatgttttcagcggcagggactgggagactagtcaggattgaggcaaagatgaacggagcaaagtacagagagatccttgatgaaaacctgctccaggaccacagactggggtgaaggttcaccttccaacaggacaacgaccctaagcacacagccaagacaatgcaggagtggcttcgggacaagtctctgaatgtccttgagtggcccagccagagctccaacttgaaccagatcgaacatctctggagagacctgaaaatagctgtgcagcaacgctccccatccaacctgacagagcttgagaggatctgcagagaagaatgggagaaactccccaaatacaggtgttccaagcttgtagtgtcatacccaaaaaTACTTTAGGCTGTCATCGCTAccataggtgcttcaacaaactattgagtaaggggtatgaatacttaaatataatttacataaggttttttatttttaatgagtGGGGTGTTGACTGTAGATTGATTGAGGTGGAAAGAACTATTtcgtcaattttagaataaggctgtaacgtaacaaaatgtggaaaaagtcaaggggtctgaatactttctgaaggcactgttgtaTATGCAGCCCCTCATGAGCAACATGTTTCCCATAAggacctaaactcagcaaaaaaagaaacgtcctctcactgtcaactgcgtttattttcagcaaacttaacgtgtaaatatttgtatgaacataacaagattcaaaaactgagacaTAAAATGaaaaagttccacagacatgtgactaacagaaatggaataatgtgtccctgaacaaagggggggttaaaatctaaagtaacagtcagtatctggtgtggccaacagctgcattaagtactgcagtgcatctcctcatggactgcacaatatttgccagttcttgctgtgagatgttaccccactcttccaccaaggcacctgcaagttccaggacatttctggggggggaatggccctagccctcaccctctgatccaacaggtcccagatgtgctcaatgggattgattgcctgcaatgacaatatgatgctgtgacacactgccccagaccatgacggaccctccacctccaaatcgatccggctccagagtacaggcctcgatgtaacgctcattccttcgatgataaacgcgaatccgaccatcactcctggtgagacaaaaccgcgactcatcagtgaagagcactttttgccagtcctgtctggtccagcgacggtgggtttgtgcccgtaggcaacgttgttgctggcgatgtctggtgaggacctgccttacaacaggcctacaagccctcagttcagcctattgcggacagtctgagcactgatggagcgattgtgcattcctggtgtaactcgggcagttgttgccatcctgtacgcgtcttgcaggtgtgatgttcgaatgtaacgatcctgtgcatgtgttgttacacgtggtctgccacctCGAGGATGATCAGATGTCTGTTCTgtttccctgtagcgctgtcttgggtgtctcacagtacagacattgcaatttattgccctggccacatctgcagtcctcatgcctccttgcagcatgcctaaggcacgttcgcGCAGAtgtgcagggaccctgggcatctttatttggggttttttcagagtcagtagaaaggcgtctttagtgtcctaagtgttcataactgtgaccttaattgcctaccgtctgtaagccgttagtgtcttaacgaccgttccacaggtgcatgctcattaattgtttatggttcattgaacaagcatgggaaacagtgtttaaaccctttacaatgaacatctgtgaagttatttggatttttacgaattatctttgaaagacagggtcctgaaaaagggatgtttctttttttgctgagtttataagctCCGCccattcaatattttttttttatttctgcaTCATTCATGGGGGACAACATGTTTACTGATGCCTTGTTAACTTATTTTAATgattctaaaaatatatatatattgggttTTTTAAATACACAACTATAATTCCCATTTGTTTTGGTTTTAGGTTTGTGGAGAGAGTACAATACCGACTGTGCCAGATGAAATGCAATATTCTTTATTGTTGGAGTCATGTTACTTTTTCCTTAATGGGATTGTGCTTATTACTGTTGCTAATAAGGTAATTGAGCCATGTATTCACCTTGTTTGGCATTATGAATGTTTGAATGTTTTTCATGTCACTTGACTAAAAGAGAATGTACGGTATCATGCACTTTGAAGCTAACTAATGCTGCATGTTCTTCTATGATTCCCAGACtgtttttttaacaaataaactgCTGTATTGC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU305075 lncRNA downstream 72441 49806408 ~ 49806670 (-) True G268502
TU305074 lncRNA downstream 73932 49804977 ~ 49805179 (-) True G268501
TU305031 lncRNA downstream 84494 49791748 ~ 49794617 (-) False G268467
TU305043 lncRNA upstream 41177 49922997 ~ 49930662 (-) True G268470
TU305123 lncRNA upstream 59056 49940876 ~ 49945765 (-) False G268548
TU305125 lncRNA upstream 59056 49940876 ~ 49945765 (-) True G268548
TU305138 lncRNA upstream 79095 49960915 ~ 49961213 (-) True G268560
TU305266 lncRNA upstream 164106 50045926 ~ 50046290 (-) True G268673
XR_002472942.2 mRNA downstream 7430 49867187 ~ 49871681 (-) False LOC110520119
XR_002472943.2 mRNA downstream 7436 49867187 ~ 49871675 (-) False LOC110520119
XR_005048133.1 mRNA downstream 7633 49867187 ~ 49871478 (-) False LOC110520119
XM_036974446.1 mRNA downstream 17035 49814771 ~ 49862076 (-) True LOC110520118
XM_036974445.1 mRNA downstream 20762 49814771 ~ 49858349 (-) False LOC110520118
XM_021597195.2 mRNA upstream 505 49882325 ~ 49895110 (-) False LOC110520120
XM_021597196.2 mRNA upstream 13507 49895327 ~ 49901575 (-) False LOC110520121
XM_036974448.1 mRNA upstream 13507 49895327 ~ 49901575 (-) False LOC110520121
XM_021597197.2 mRNA upstream 23613 49905433 ~ 49920327 (-) False LOC110520122
XM_036974450.1 mRNA upstream 23613 49905433 ~ 49920328 (-) True LOC110520122
TU305027 other downstream 7466 49867217 ~ 49871645 (-) True LOC110520119
TU304905 other downstream 311637 49563848 ~ 49567474 (-) True LOC110520112
TU304903 other downstream 313122 49563848 ~ 49565989 (-) False LOC110520112
TU304858 other downstream 376140 49502416 ~ 49502971 (-) True LOC118944672
TU304852 other downstream 383308 49495477 ~ 49495803 (-) True G268310
TU305117 other upstream 18353 49900173 ~ 49901538 (-) True LOC110520121
TU306341 other upstream 558385 50440205 ~ 50442872 (-) True LOC110520139
TU306786 other upstream 1246620 51128440 ~ 51129310 (-) True LOC110520160
TU307414 other upstream 1591504 51473324 ~ 51474139 (-) True fgf9
TU307458 other upstream 1715579 51597399 ~ 51599898 (-) False il1rl1

Expression Profile