RNA id: XM_036974448.1


Basic Information

Item Value
RNA id XM_036974448.1
length 2326
RNA type mRNA
GC content 0.48
exon number 9
gene id LOC110520121
representative False

Chromosome Information

Item Value
chromosome id NC_048567.1
NCBI id CM023221.2
chromosome length 85311031
location 49895327 ~ 49901575 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

ACAACAATACTGTTCCCCATTACAGAACATGAAGAAGCAAGTCAGCGTTGCCATTATTCTGACCACGTTTTGAAGTAGTACAGAAATCAATGTTGTCACCTTGCTAGCTGCTCACCCTCTATTCGAAGACTCAAGACATTGGATACCCCAGATTTGATGGGCAAATAACACAAAAATGAATCGGCTGCTTTTTGTTTCTCATCTTCTTATCATTCTTACAGTCTTCTGATGCTGTAAACCCCAAACTGTACCATGCGAGCCATACACCAAGCTGTCTCTGGTTTCCTTGGAGGTTCTGCCTGGGGCTCTGATGATGAGACCCGTCTGGTGAAAACCCTGTTCACTGGCTACAACAAGGTGGTGCGTCCTGTCGCTCACTTCAAGGACCCAGTGGTGGTTACAGTTGGCCTGCAGCTCATTCAACTCATCAGTGTGgatgAGGTCAACCAGATTGTTAACAGCAATGTTCGACTGAAACAGCAATGGAAGGACGTGAACTTGCAATGGAATCCTGAGGATTATGGTGGAATCAAAAAGATAAGAGTGCCCTCCACTGACATTTGGCGCCCTGACCTCGTTCTCTATAACAATGCTGATGGTGACTTTGCCATCGTTCACGAGACCAAAGTGCTGCTGGAACACACTGGCATGATCACGTGGAACCCCCCTGCCATCTTCAAGAGCTACTGTGAGATCATCGTGCTGCACTTCCCCTTCGACCTGCAGAACTGCAGCATGAAGCTGGGTACCTGGACCTATGATGGCAACTTGGTTGTCGTCAATCCCGACAGCGATCGTCCTGACCTGAGTAACTtcatggagagtggagagtgggtgATGAAGGACTACCGCAGCTGGAAACACTGGGTGTACTATGCCTGCTGCCCAGACACGCCCTACTTGGACATCACCTACCACTTCCTGATGCTGCGGCTGCCCCTCTACTTCATCGTCAACGTCATCATCCCCTGCATGCTCTTCTCATTCCTCACTGGCCTCGTCTTCTATCTGCCCACTGACTCTGGTGAGAAGATGACTCTGAGTATCTCTGTCCTGCTGTCTCTGACTGTGTTCCTGCTGGTCATCGTTGAGCTCATCCCCTCCACATCCAGTGCTGTGCCGCTCATCGGGAAGTACATGCTCTTCACCATGGTTTTCGTCATTGCCTCCATCATCATCACTGTCATCGTCATCAACACCCACCACCGTTCCCCCAGCACTCACACCATGTCCCCCTGGGTTCGCAAGATTTTCATTGACACCATTCCCAACCTCATGTTTTTCTCAACAATGAAACGTCCGGCAAAGGAGAAACAGGATAAAAACATCTATGGTGCTGACTTTGACATCTCAGACATCTCAGGCAAGCCCACCCCTACTGCAGTCACCTACCAGTCCCCCATCACCAAGAACCCCGACGTACGCAGTGCTATTGAGGGGGTGAAGTACATCGCTGAGACCATGAAATCTGATGAGGAGTCCAACAGTGCTGCTGAAGAGTGGAAGTTTGTGGCCATGGTGCTGGATCACattctgctgtgtgtgttcatggggGTGTGTATCATTGGCACACTGGGGGTGTTCGCAGGCCGTCTCATTGAGCTGAGCATGACGCCCTAGAGGTCTGCGGTGTGTCATGTATAGTGCCAGACGTTTTAattgacctgaccaggaaaaacctCTGGGCCTAAGTGACTCTAAAAGTCAAATATTGCTGTGTGTAGACTTGCTTGCTGCTGTTTTTGACCCTCCTGTTAACAGTATAAACATGCATTATTATTGGGTGGTTTGcaatttgtcacaccctgatctgtttcacctgtctttgtgattgtctccaccccctccaggtgtcgtccatcttccccattatcccctgttctctgtttgtctgttgcctgtTTGCTTTCTTTTGTCAAGCTCACCAGCAGTTTTCCTTCTGCTCCTGTCGctcgattgttcctgtttcctagttgaccattctgtctgcccctgaccctgcctgctgtcctgtatctttgccccacctatctggattacttaCCTCTGCCGGCCCTTGACCTGCCTTTTGCATGCCCCTGTTCtattaataaactgttgttacttcgactttgtctgggtcttacctgaaacataCAATTAGCTCAGATTGCTGGGTGCATGCATGTTTATCCATATTTTCACTAATGTGTGTTAATTTTCGAGCAGTTGAGCCACATTCTAATCAAGTTTATTGTAATCAAGGTATTTGTTCTAGTTCCTCAATGCATTTTTTAATATGTTTTCATGAATCTATAATTCAGTATTTAATAAATAAAGTCCATAC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU305030 lncRNA downstream 13507 49879111 ~ 49881820 (-) True LOC110520120
TU305075 lncRNA downstream 88657 49806408 ~ 49806670 (-) True G268502
TU305074 lncRNA downstream 90148 49804977 ~ 49805179 (-) True G268501
TU305032 lncRNA downstream 100710 49793508 ~ 49794617 (-) False G268467
TU305043 lncRNA upstream 21422 49922997 ~ 49930662 (-) True G268470
TU305123 lncRNA upstream 39301 49940876 ~ 49945765 (-) False G268548
TU305125 lncRNA upstream 39301 49940876 ~ 49945765 (-) True G268548
TU305138 lncRNA upstream 59340 49960915 ~ 49961213 (-) True G268560
TU305266 lncRNA upstream 144351 50045926 ~ 50046290 (-) True G268673
XM_036974447.1 mRNA downstream 217 49879110 ~ 49895110 (-) False LOC110520120
XM_021597193.2 mRNA downstream 217 49879111 ~ 49895110 (-) False LOC110520120
XM_021597195.2 mRNA downstream 217 49882325 ~ 49895110 (-) False LOC110520120
XR_002472942.2 mRNA downstream 23646 49867187 ~ 49871681 (-) False LOC110520119
XR_002472943.2 mRNA downstream 23652 49867187 ~ 49871675 (-) False LOC110520119
XM_021597197.2 mRNA upstream 3858 49905433 ~ 49920327 (-) False LOC110520122
XM_036974450.1 mRNA upstream 3858 49905433 ~ 49920328 (-) True LOC110520122
XM_021597199.2 mRNA upstream 60892 49962467 ~ 49978117 (-) False atf2
XM_021597200.2 mRNA upstream 60892 49962467 ~ 49978117 (-) False atf2
XM_036974452.1 mRNA upstream 60892 49962467 ~ 49978120 (-) False atf2
TU305027 other downstream 23682 49867217 ~ 49871645 (-) True LOC110520119
TU304905 other downstream 327853 49563848 ~ 49567474 (-) True LOC110520112
TU304903 other downstream 329338 49563848 ~ 49565989 (-) False LOC110520112
TU304858 other downstream 392356 49502416 ~ 49502971 (-) True LOC118944672
TU304852 other downstream 399524 49495477 ~ 49495803 (-) True G268310
TU306341 other upstream 538630 50440205 ~ 50442872 (-) True LOC110520139
TU306786 other upstream 1226865 51128440 ~ 51129310 (-) True LOC110520160
TU307414 other upstream 1571749 51473324 ~ 51474139 (-) True fgf9
TU307458 other upstream 1695824 51597399 ~ 51599898 (-) False il1rl1
TU307459 other upstream 1696360 51597935 ~ 51600230 (-) True il1rl1

Expression Profile