RNA id: XM_021597200.2


Basic Information

Item Value
RNA id XM_021597200.2
length 3486
RNA type mRNA
GC content 0.44
exon number 12
gene id atf2
representative False

Chromosome Information

Item Value
chromosome id NC_048567.1
NCBI id CM023221.2
chromosome length 85311031
location 49962467 ~ 49978892 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

TGATTGTACACAAAAATATCGCCCTTGTAACGATTTCTTGGCATTCGTGGGGATATAAGCTTGAATAAAAATGATTGGTCTGTGATGAATGCAGATCCTGTCTGTATTAGCAGTTATAAATAGAGCTAATATGGCCACGGTGATATGCTTGCAGATGCTACCCTGCCTAAATGGGCGGTGTGGATGGATAGGGCTTGGTAGCGTGATGATGGGTATAAAAGGAGTTCCTGAATATGAGTGATGACAAACCTTTCTTATGCGCTGCTCCTGGGTGTGGTCAGCGATTTACAAACGAAGACCACTTGGCTGTCCACAAACATAAACATGAGATGACACTCAAGTTTGGTCCAGCAAGGGACAACAGTGTCATCGTTGCTGACCAAACACCAACACCTACACGCTTTCTGAAGAATTGTGAGGAAGTGGGACTCTTCAATGAGCTTACCAGTCCATTTGAGCATGACTTCAAAAAAGCTACTGAGGATGACCTCAAAAAGATGCCCTTGGATCTGTCGCCTCTTGCCACACCAATGATCATACAAAATAAAATTGAGGACCACTCAGCTGTGGAGGCACATCGGGGCAGCCCTCTGCCCCATCCGGAATCTACAACAAGTGACGACAAGGAGGTATCTTTGCAGCCGACCTCACTGCCAAcctctactatagtccatcctGCATCCCTCCAAGTCCCAAATGTACTCCTAGCAACCTCAGACGCTAGTGTTGTTATACAGCAAGCTCTCCCATCGCCAACATCTAGCTCTGTAATTACCCAAGTCCCATCCTCTAATAGACCAATAGTtccAGTCTCTGGAACTTTTCCTGTACTCTTTCAGCTGCCTAATGGACAAACCATGCCCATCGCAATCCCAGCAACCATTGCATCTAGTGTACATATTCCAACCGCAATTCCTCTTGTCAGACCCGTCACCGTAGTGCCTAACGTCCCTGGGATCCCTGGACCGCCCTCGCCTCAAGCCGTCCAATCAGAAGCTAAGCTGAAGCTGAAGGCAGTGCTAAGCCAGCAGCTCCCTCAGGTAACCAATGGAGATTCGGGTGATGTCCAGAGCAGTGCTGTGACCCACAATGCAGCCCCGGCCCTGGTCCCTTCCCCATCTCTGTCTCCTGGCCCTCCCCTGGCCCCGCCTGAGGAACCCTGCCCCCAGACCCTCCAGCAGCCTGCCACCTCCACCACTGAGACGCCTGCGACTAAGGCGCACCCTGCCCAGCACACAGGGGGCCGGCGGCGCAGAGCCACCAGCGAGGACCCGGACGAGAAGAGGCGTAAGTTCCTGGAACGCAACCGAGCTGCGGCGTCCCGCTGCAGACAGAAGAGGAAGGTCTGGGTGTCTTCGCTGGAGAAGAAGGCTGAGGACCTCAACTCTATGAACGGACAACTACAGAGTGAAGTCACCCTGCTGAGAAATGAAGTGGCTCGGCTGAAGCAGCTTCTTCTGGCTCATAAAGATTGCCCTGTAACCGCCATGCAGAAGAAATCTGCCTATCACAcatCTGAGAAGGAAGACAGCTGTGAGGAGATGTCAGTCCCAGGCAGCCCCCAGAACGAGGCCATCCAGCACAGCTCCGTCAGCACCTCCAACGGAGTCAGCTCCTCCTCCATGACCCCTGCTGCCTCCGCCCCTGCCACAGCAGACCAGAGCACAGAGGATGGCCAGGCACAGCGTGGCGCTGCCCTGTCCACCATCCAGACTCAGCCCTCAGGAAGCTGATCAGCCCCACCGCACCGAAGGCAGTGGCCCAGCCTCGCTGCTGCCTCTGTAGGGGAAAGGAACTCTCACTCAGCTTCGGTTTGGACTATACTGTATTTGCTCattgtttggtttctgtttcttTCGATTTTCTTGGAATGCAATGTAATGGTTTGTTGGAAATTGGTAAAGATGCAAAAGAAGGCCCTTTACGAATGGTTCGAAGATGGAAATGATTGTCTTATTTCCACCTTGTTTTCTAGTCCttctgatttatttatttaactgtaCACATGTCCTTTTTGTTTTGGACCTCTGTGAACTTTGAAGTTGTAATGATTTGAATCAGTGCATTGTCAATGAGACCTTACCAAAGTGTGTTGTGGCTCACTTGgaatgtatttgtttttaatgGCCTTTTATATCCTTATTTTATGGTGAGAAGACGTAAGGAGCAGACACTTTCATTGTTTTGCCTTTTTCATTTTGCACATAACAGATGAAGGGTTTAACTTTTTAGTGTTTTTTGATTGTTCCAATAAGATGTACTGGCAGCTTTTTAAGGTAGATTTTAATACCTGTCTCGTTACAAAACTTCAACGGTTGAATCAGATTTGAACTGACAACGTTTATGTGAGTGATTTTAGTTTGGCTACGTCTGCCGGTAGCATGATGTGGTTTAAATGTTCAGAGTTGCCTGCACTTGTAAAATAGGAGCTTGGGTCGAATTCTATGTGCGTTCTTTGACCAACATTCCATTTGTAGTTTGATTGTTTCATGAACCAGTGATTGTAGGATTGCAGTACATTTTACATTACATAAACATGTTGACTCAACCATGTGCCATTAATTTTATCACACAGATTGATTTGTCATTAGAATTATGGGTGTTTCCATGTACGTAATTTCTTGGTATAGGAGATCCGTTTCTTCTGAATAATGTTTCTGCTTACTAAGTGACTTGTCCATTGCTTTGATGTTTGACTCTGAACCCTTGAGGAAATATTCATGTTACTTAAGAATATGACATTTTTAGGAAACATTGTAAATAACATCATTACTGACACATTGTGGTTTTTCCAGATGTCATACTTTTTAAAAACGTGTTAGAGTCCTAATAAGTTTTATTTGTATTAAATAAATATCAACTTGAGGAACCTTTACTGGCCTCCAACCTAAAACGAAGGCTCTGTTTGCCTTGCATAGTAGTACAATAACTTTGAAAACACTAATAGTCACATACTGCGCCAGAAACTTAATGAGGAATCAATGATGTATGTGTATATGTTGATCTTATACTGCTTTTAAGGCTAGTGACGTTTTAGAAAATAGTTGTAGTTGGCAAATCATACAATTATTATTTTGTATCAAATTGCCTTTTCTCTTTAAACGTATTGGCTTACTACTGTGTAGTTTAACGAGACACTACTACATTTAGTTTCAGACCTCATTTGTTCctttttaatttaaccaggtttTTTTGTACTGTCACTTATGTGCTCTCAGCATGATTTCAATAATTCTCTGAGAGAATTAAACTGATATTTAATAATGTCTCAGTCAAATAAGTAACATTGAACATGTTTCACCTTGAGTTATAACTAGCTGGTCTTAAGTTTATGAAAGGTTTTGTCAATTATTTTACCCCGGCTTAGCTGCTTAAACGGGGTGTGATATTGTGTTGACAGTAAACTTGTAACTTGTGAAAGTTATGTATAAAGTACAGTATCCTAAATTAATAAGACTTAATAAATCTTTTATCTCTTTAAATCCA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU305138 lncRNA downstream 1254 49960915 ~ 49961213 (-) True G268560
TU305123 lncRNA downstream 16702 49940876 ~ 49945765 (-) False G268548
TU305125 lncRNA downstream 16702 49940876 ~ 49945765 (-) True G268548
TU305043 lncRNA downstream 31805 49922997 ~ 49930662 (-) True G268470
TU305030 lncRNA downstream 80647 49879111 ~ 49881820 (-) True LOC110520120
TU305266 lncRNA upstream 67809 50045926 ~ 50046290 (-) True G268673
TU305294 lncRNA upstream 99667 50077784 ~ 50077987 (-) True G268700
TU305295 lncRNA upstream 100002 50078119 ~ 50078323 (-) True G268701
TU305296 lncRNA upstream 102366 50080483 ~ 50080686 (-) True G268702
TU305316 lncRNA upstream 130823 50108940 ~ 50109195 (-) True G268722
XM_036974450.1 mRNA downstream 42139 49905433 ~ 49920328 (-) True LOC110520122
XM_021597197.2 mRNA downstream 42140 49905433 ~ 49920327 (-) False LOC110520122
XM_021597196.2 mRNA downstream 60892 49895327 ~ 49901575 (-) False LOC110520121
XM_036974448.1 mRNA downstream 60892 49895327 ~ 49901575 (-) False LOC110520121
XM_021597195.2 mRNA downstream 67357 49882325 ~ 49895110 (-) False LOC110520120
XM_021597204.2 mRNA upstream 1079 49979196 ~ 49981815 (-) False LOC110520125
XM_021597203.2 mRNA upstream 1079 49979196 ~ 49981870 (-) True LOC110520125
XM_036974457.1 mRNA upstream 105983 50084100 ~ 50099551 (-) False lnpa
XM_036974458.1 mRNA upstream 105983 50084100 ~ 50099551 (-) False lnpa
XM_036974456.1 mRNA upstream 105983 50084100 ~ 50099687 (-) False lnpa
TU305117 other downstream 60929 49900173 ~ 49901538 (-) True LOC110520121
TU305027 other downstream 90822 49867217 ~ 49871645 (-) True LOC110520119
TU304905 other downstream 394993 49563848 ~ 49567474 (-) True LOC110520112
TU304903 other downstream 396478 49563848 ~ 49565989 (-) False LOC110520112
TU304858 other downstream 459496 49502416 ~ 49502971 (-) True LOC118944672
TU306341 other upstream 462088 50440205 ~ 50442872 (-) True LOC110520139
TU306786 other upstream 1150323 51128440 ~ 51129310 (-) True LOC110520160
TU307414 other upstream 1495207 51473324 ~ 51474139 (-) True fgf9
TU307458 other upstream 1619282 51597399 ~ 51599898 (-) False il1rl1
TU307459 other upstream 1619818 51597935 ~ 51600230 (-) True il1rl1

Expression Profile